Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq2029 208 2e-51 seq3559 183 8e-44 >seq2029 Length=64692 Score = 208 bits (230), Expect = 2e-51 Identities = 309/418 (74%), Gaps = 19/418 (5%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| |||| | ||||||||| |||||||||| ||| || || || || Sbjct 53422 CCACAACTCAT-CCGCCGA-TTTTTCAACATCGGTCGGTTCGGACCTTCACTTGGT-GTC 53366 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| || |||||| ||||| || |||||||| | Sbjct 53365 ACCCAAGCTT-CATCCTGGTCAT-GGTTAGATCACCCGGGTT-CGGGTCTAGAAAATAT- 53310 Query 129 GACTAGA-CGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCC---TATTCGGTTAAGC 184 |||| | ||||||| | ||||| ||||| |||| || |||| | || |||| | Sbjct 53309 GACTTTATCGCCCTATTCAGACTTGCTTT-CGCTTCGGCTCCGGATATGTTTCCTTAACC 53251 Query 185 TTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAA 244 || ||||| |||||||| | | |||| | ||| ||| |||| |||| | ||| Sbjct 53250 TT-GCCACATTTTCTAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGCGTTTAAA 53192 Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 | ||||||||| |||| ||||| ||||||| | |||||||||||||||| | ||| Sbjct 53191 C--GCCTCCCACTGGTTGTCAGCATAGGGTTTCATGTTCTATTTCACTCCCCTA-CAGGG 53135 Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTC-AGTAGTATTTAG 363 ||||||||| ||||||||||||||||||||||| |||||||||| | || ||||||||| Sbjct 53134 GTTCTTTTCACCTTTCCCTCACGGTACTAGTTCGCTATCGGTCACCCTAGGAGTATTTAG 53075 Query 364 CCTT-GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||| |||| |||||| | | ||||| || |||| |||| || | ||||||| Sbjct 53074 CCTTACGAGG-TGGTCCTCGCTGATTCACACGGGATTTCACGTGTCCCATGCTACTCG 53018 >seq3559 Length=35662 Score = 183 bits (202), Expect = 8e-44 Identities = 289/395 (73%), Gaps = 22/395 (6%) Strand=Plus/Minus Query 10 CACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTA 69 |||| ||||| || | || || | || | || |||||||||||||| ||| ||| Sbjct 28294 CACAAGTCATCCCCAT--CTATTGCCACAGATGTGGGTTCGGTCCTCCAAAACGTA-TTA 28238 Query 70 CCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCG 129 | | ||||||||||| ||| | |||||||| ||||| |||||| | || || Sbjct 28237 TC-ATTTTTTCAACCTGCTCAT-GATTAGATCGCTTGGTTT-CGGGTCAAATTTA-AGAA 28182 Query 130 ACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCT-ATTCGGTTAAGCTTTG 188 ||| || || | | || || || | || ||||||| || | | ||| |||| | Sbjct 28181 ACTTAGGGCTCTTTTCAAGCTTGCATT-CACTCCGCCTCCACTTAAGAGCTTAGGCTT-G 28124 Query 189 CCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACC---CAACAAAG 245 | | ||| | | ||||||||||||||| |||||||||||| || || ||| |||| Sbjct 28123 CTTCATAAATTTACTCGCTGACCCATTATGCAAAAGGTACGCCGTAACTTTTCAAAAAAG 28064 Query 246 TGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGG 305 || | |||||||||| |||| | |||||||||||| |||||||||| ||| ||| Sbjct 28063 ----CTTCGACTGCTTGTAAGCATTCAGTTTCAGGATCTTTTTCACTCCC-TCTTTAGGG 28009 Query 306 TTCTTTT-CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAG-TCAGTAGTATTTAG 363 |||||| | |||||||||||||||||| ||||||||||| |||| |||| || |||| Sbjct 28008 ATCTTTTTCACCTTTCCCTCACGGTACTTGTTCACTATCGATCAGAAGAGTA-TACTTAG 27950 Query 364 CCTTGGAGGATGGTCCCCC-CATATTCAGACAAAG 397 ||| |||| ||||||||| | ||||| |||||| Sbjct 27949 GCTTAGAGGGTGGTCCCCCTTAAATTCAAACAAAG 27915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241555302400