Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq2029 214 4e-53 seq3559 109 1e-21 >seq2029 Length=64692 Score = 214 bits (236), Expect = 4e-53 Identities = 299/410 (73%), Gaps = 17/410 (4%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| || ||||||||| ||| ||| | Sbjct 54025 CGACTACGCCTTTCGGCCTCGCCTTAGGTCCTGACTCACCCTCCATGGACGAACCTAGTG 53966 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 |||| |||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 53965 GAGGAATCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 53906 Query 120 GCATTCTCACT--CGCATCAACTCCACCAC-ACAGTCACCCGGCAGCTTCACCACTGA-- 174 |||||||||| ||| || ||||| | || ||| | |||||||||| || | Sbjct 53905 ACATTCTCACTTCCGCTTCG--TCCACTATGACTTTCATCA--CAGCTTCACC-CTAAAG 53851 Query 175 CACGACGCTCCCCTACCCAACC----ACACAGGTTGCCACAGCTTCGGCGGATAACTTAA 230 || ||||||||||||| | | | | | ||||||||||||| ||| | ||| Sbjct 53850 CAGAACGCTCCCCTACCGATAGTTTAATAAACTATCCCACAGCTTCGGCAGATCATTTAG 53791 Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA 290 ||| | ||||| ||||||| | | || ||||||||||||||||||||||||| || Sbjct 53790 TCCCGG--ACATTTTCGGCGCAAGAACGCTCCACCAGTGAGCTATTACGCACTCTTTAAA 53733 Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350 ||||||||||||| |||| |||||||||||||| | ||| ||| |||||| |||| Sbjct 53732 GGATGGCTGCTTCTAAGCAAACCTCCTGGTTGTTTCTGCATTCTCACCTCCTTTGTCACT 53673 Query 351 GAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | | || || |||||||||||| ||||||||||||||||||||||| Sbjct 53672 TAACGATCATTTTGGGGCCTTAGCTAGTGATCTGGGCTGTTTCCCTCTCG 53623 >seq3559 Length=35662 Score = 109 bits (120), Expect = 1e-21 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 262 GACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTT 321 ||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||| Sbjct 28635 GACCAGTGAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCTACCTCCTGGTT 28576 Query 322 GTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGAT 381 || | || || |||||| ||||| || | ||||| ||||||| ||| Sbjct 28575 GTTTTAGCCTAGAAACTTCCTTTGCCACTCAGAAAGTGTTTAGGAACCTTAGCGTTCGAT 28516 Query 382 CTGGGCTGTTTCCCT 396 ||||| ||||||||| Sbjct 28515 CTGGGTTGTTTCCCT 28501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177557606400