Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq2029 109 5e-22 seq288 96.9 3e-18 >seq2029 Length=64692 Score = 109 bits (120), Expect = 5e-22 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| || ||| || | || ||| ||||||||| Sbjct 51406 CGAGTTGCAGCCTGCAATCCGAACTGAGACCGGGTTTTTGAGGTTGGCTAGCCCTCGCGG 51347 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 ||| || | || ||| |||||||| ||||||| |||| | |||||| ||| Sbjct 51346 GTTTGCATCTCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGACGTAAGGGGCAT 51287 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | ||||||||||||||| ||||||||||||| ||||||| Sbjct 51286 GCTGACTTGACGTCATCCTCACCTTCCTCCGGCTTGTCAC 51247 >seq288 Length=17438 Score = 96.9 bits (106), Expect = 3e-18 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||| ||||||| |||||| | |||| | | ||| || |||| ||||| | | Sbjct 7873 TCGAATTGCAGAGAACAATCTGAACTAGGGTGAGTTTTTTGAGATTTGCTCCAATTTTCA 7932 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | || | || ||||| ||||||||| ||||||| ||||| |||||||||| || Sbjct 7933 TTCTAGCTTCTCTTTGTATTCACCATTGTAACACGTGTGTAGCCCAGCCCATAAGGGTCA 7992 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||||||||| ||||| |||||||| || | |||| Sbjct 7993 TGAGGACTTGACGTGATCCCTTCCTTCCTCTAGTCTATCAC 8033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415985492000