Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq3559 187 4e-45 seq2029 140 5e-31 >seq3559 Length=35662 Score = 187 bits (206), Expect = 4e-45 Identities = 197/257 (77%), Gaps = 2/257 (1%) Strand=Plus/Minus Query 16 GCTT-AGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGC 74 |||| |||||| |||||| || | | |||| ||| ||||| | |||| |||| |||| Sbjct 31288 GCTTGAGATGCTTTCAGCAGTTCTACGTTCCGAACGTAGCTACTCAGCGATGCTGCTGGC 31229 Query 75 AGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCC 134 ||||||| | ||| ||||||| ||| ||||||||||||||||| | ||| | | | Sbjct 31228 GCAACAACTGATACACTAGAGGTTCGTCATTCCCGGTCCTCTCGTACAAGGGAATGGTTC 31169 Query 135 TCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACC 194 |||||| ||| ||| ||| | |||||| ||| |||||||| |||||| || |||| Sbjct 31168 TCTCAATTTTT-TACACCCGAAAAAGATAGGATCCGTACTGTCTCACGACGTACTAAACC 31110 Query 195 CAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCA 254 || ||| ||| || |||| || ||||||||||| ||||||| | |||| ||||||| | | Sbjct 31109 CAACTCACGTACCGCTTTCATCGGCGAACAGCCGAACCCTTCGAACCTTCTTCAGCTCGA 31050 Query 255 GGATGAGACGAGCCGAC 271 ||||| || ||| |||| Sbjct 31049 GGATGCGATGAGTCGAC 31033 >seq2029 Length=64692 Score = 140 bits (154), Expect = 5e-31 Identities = 141/182 (77%), Gaps = 1/182 (1%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||||||| ||||||||| |||||| |||||| ||| || | ||| ||||| Sbjct 56228 GAGGTGGGCTTCCCACTTAGATGCTTTCAGCGGTTATCCACTCCGCACATGGCTACCCAG 56169 Query 62 C-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 | | | | |||||| | ||||||| ||||||||| |||| ||| |||||||||||| Sbjct 56168 CGTGTACCGTTGGCACGATAACTGGTATACCAGAGGTGCGTCCTTCCAGGTCCTCTCGTA 56109 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||| ||| ||||||||||| || ||||| || |||||| ||||||||||||||| Sbjct 56108 CTATGGAAGGCTCCTCTCAATGCTCTAACGCCTACACCGGATATGGACCGAACTGTCTCA 56049 Query 181 CG 182 || Sbjct 56048 CG 56047 Score = 123 bits (136), Expect = 4e-26 Identities = 83/93 (89%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || |||| ||||||||||||||||||||||||||| | Sbjct 55231 ACGTTCTGAACCCAGCTCACGTACCGCTTTCATGGGCGAACAGCCCAACCCTTGGGACGT 55172 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| | |||||||| || || |||||||||||| Sbjct 55171 ACTACCGCCCCAGGTTGCGATGAGCCGACATCG 55139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780772769600