Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq2029 273 5e-71 seq288 176 1e-41 >seq2029 Length=64692 Score = 273 bits (302), Expect = 5e-71 Identities = 311/412 (75%), Gaps = 19/412 (5%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 |||||||||| |||||||| || | |||||||||| ||| | ||||||| |||||||| Sbjct 50552 TTTACAACCCATAGGCCTTCATCCTTCACGCGGCATTGCTCCGTCAGGCTGTCGCCCATT 50493 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || ||||| |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 50492 GCGGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 50433 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||||||||||||| |||| | |||| ||| ||||||||| | ||| Sbjct 50432 GGCTGATCATCCTCTCAGACCAGCTACTGATCATTGCCTTGGTAAGCCATTACCTCACCA 50373 Query 185 ACTAGCTAATCCCATCTG--GGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTT 242 || ||||||| || | | | |||| || | ||| | | | ||||| Sbjct 50372 ACAAGCTAAT--CAGCCGCAAGCCCATC---TATT----GGC-----GATTTTCATCTTT 50327 Query 243 GGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGG 302 | | | || | ||||||||||| |||||||| |||||||||| ||||| ||| Sbjct 50326 CACTTCTCAGCAATACGAGGTATTAGCCATCGTTTCCAATGGTTATCCCTCTCCAAAAGG 50267 Query 303 CAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCC 362 || ||| | ||||||||||||||||||||| || || | |||||| | Sbjct 50266 TAGGTTCTTACGTGTTACTCACCCGTCCGCCACTCATC-GCAATCTGGCAAGC--CAAAT 50210 Query 363 TGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 || ||| |||||||||||||||| || ||||||||||||||| ||||| Sbjct 50209 TGCATGCGTACGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 50158 >seq288 Length=17438 Score = 176 bits (194), Expect = 1e-41 Identities = 156/194 (80%), Gaps = 1/194 (1%) Strand=Plus/Plus Query 4 CTTTACAACCCGAAG-GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCA 62 |||||||||| || | |||| || |||||| | |||| ||||||||| |||||| Sbjct 8916 CTTTACAACCAAAACAGTCTTCGTCGCCCACGCGATCTAGCTGGATCAGGCTTTCGCCCA 8975 Query 63 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 122 |||| ||||||||| |||||||||| | || | | |||||| |||||||||||| ||||| Sbjct 8976 TTGTCCAATATTCCTCACTGCTGCCGCTCGAAAGCGTCTGGGCCGTGTCTCAGTCCCAGT 9035 Query 123 GTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGC 182 ||||| | |||||||||||||||||||| ||||| | | || ||| ||| |||| | | Sbjct 9036 GTGGCCGATCATCCTCTCAGACCAGCTAAGGATCTTTGGCTTGGTAGGCTTTTACTCTAC 9095 Query 183 CAACTAGCTAATCC 196 |||||| ||||||| Sbjct 9096 CAACTACCTAATCC 9109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222355993600