Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq2029 327 3e-87 seq288 255 2e-65 >seq2029 Length=64692 Score = 327 bits (362), Expect = 3e-87 Identities = 279/342 (82%), Gaps = 3/342 (1%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 ||| |||||||||| |||||| |||||| ||||||||||||| | |||||||||| | | Sbjct 50356 GCGGCTGATTAGCTTGTTGGTGAGGTAATGGCTTACCAAGGCAATGATCAGTAGCTGGTC 50415 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||||||| ||||| |||||| ||| |||||||||||| ||| |||||||||||||||||| Sbjct 50416 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGC 50475 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 |||| ||||| || | |||||||| | ||||||| | ||||| ||||||||| |||||| Sbjct 50476 AGTGAGGAATTTTCCGCAATGGGCGACAGCCTGACGGAGCAATGCCGCGTGAAGGATGAA 50535 Query 341 GGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGGA 398 ||||| |||| ||||| ||| | |||| ||||| | |||||||| |||||| | Sbjct 50536 GGCCTATGGGTTGTAAACTTCTTTTCTCAGAGAAGAAGCATTGACGGTATCTGAGGAATA 50595 Query 399 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 458 ||| ||||||||| ||||||||||||||||||| || ||| || |||||||||||| Sbjct 50596 AGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCGG 50655 Query 459 AATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||| | | |||||||||| || |||||||| || ||||| Sbjct 50656 AATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTAAAAAGTC 50696 >seq288 Length=17438 Score = 255 bits (282), Expect = 2e-65 Identities = 255/327 (78%), Gaps = 3/327 (1%) Strand=Plus/Minus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 |||| |||||| ||||||||| |||| || ||||||| | | |||| |||| | | Sbjct 9114 GCGTAGGATTAGGTAGTTGGTAGAGTAAAAGCCTACCAAGCCAAAGATCCTTAGCTGGTC 9055 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||||||| |||||||||||| ||| |||||||||||| ||| || | | || | |||||| Sbjct 9054 TGAGAGGATGATCGGCCACACTGGGACTGAGACACGGCCCAGACGCTTTCGAGCGGCAGC 8995 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 |||| ||||||||| ||||||||| |||||||||| |||| | |||||| |||| ||| Sbjct 8994 AGTGAGGAATATTGGACAATGGGCGAAAGCCTGATCCAGCTAGATCGCGTGGGCGACGAA 8935 Query 341 GGC-CTTCGGGTCGTAAAGCTCTGTCCTCAAGGA-AGATAATGACGGTACTTGAGGAGGA 398 | | || ||| ||||||| || | ||||| | |||| ||||| | ||||| | | Sbjct 8934 GACTGTTTTGGTTGTAAAGCCCTTTACTCAAACAGAGATTATGACAGAGTTTGAGAAAAA 8875 Query 399 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 458 || |||||| || |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct 8874 AGTCCCGGCCAATCTCGTGCCAGCAGCCGCGGTAATACGAGAGGGGCGAGCGTTATTCGG 8815 Query 459 AATTACTGGGGCGTAAAGGGTGCGTAG 485 ||| | | |||||||||| | ||||| Sbjct 8814 AATGA-TTGGGCGTAAAGAGCACGTAG 8789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497546086400