Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq2029 297 5e-78 seq288 138 3e-30 >seq2029 Length=64692 Score = 297 bits (328), Expect = 5e-78 Identities = 308/404 (76%), Gaps = 0/404 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 50587 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 50646 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||| || ||| Sbjct 50647 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTAAAAAGTCTCCTGTCAAA 50706 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||| ||||| ||| | || |||||| ||||||||| | ||||||| Sbjct 50707 GATCAGGGCTTAACCCTGGGCCGGCAGGAGAAACTCTTAGGCTAGAGTTTGGTAGGGGCA 50766 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||||| ||| |||||||||||||||||| || |||||||||||| |||||| Sbjct 50767 GAGGGAATTCCCGGTGGAGCGGTGAAATGCGTAGAGATCGGGAGGAACACCAAAGGCGAA 50826 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | |||||||||||||| |||||||| |||||||||| ||||| Sbjct 50827 AGCACTCTGCTGGGCCATAACTGACACTGAGAGACGAAAGCGAGGGGAGCAAAAGGGATT 50886 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGC 364 |||||||| ||||||| |||||||||||||| ||||||| ||| ||| | ||| | Sbjct 50887 AGATACCCCTGTAGTCCTCGCCGTAAACGATGGATACTAGATGTTGGGTAGGTTAAATCA 50946 Query 365 TCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | || || ||| ||||| |||||| || ||||||||||| Sbjct 50947 CTCAGTATCGTAGCTAACGCGTGAAGTATCCCGCCTGGGGAGTA 50990 >seq288 Length=17438 Score = 138 bits (152), Expect = 3e-30 Identities = 136/173 (79%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 166 CTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAG 225 |||||||| || || | |||||||||| | |||| ||| |||| || ||||| || Sbjct 8650 CTAGAGTGAGTAAGAGGAGAATGGAATTCCTGGCGTAGAGGTAAAATTTGTTGATATCAG 8591 Query 226 GAGGAACACCAGTGGCGAAGGCGGCTTGCTGG-ACTGTAACTGACACTGAGGCTCGAAAG 284 ||||||||||| |||||||| | |||| ||| | ||||| ||||| |||||| Sbjct 8590 GAGGAACACCAAAAGCGAAGGCAATTCTCTGGGACTCCA-CTGACGTTGAGGTGCGAAAG 8532 Query 285 CGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||||||||||||| ||||||||||||| |||||||||||||| |||||||| Sbjct 8531 CGTGGGGAGCAAAGGGGATTAGATACCCCCGTAGTCCACGCCGTCAACGATGA 8479 Score = 93.3 bits (102), Expect = 1e-16 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 4 TTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAG 63 ||||| | ||| |||||| || |||||||||||||||||||||||| ||||| || Sbjct 8884 TTGAGAAAAAAGTCCCGGCCAATCTCGTGCCAGCAGCCGCGGTAATACGAGAGGGGCGAG 8825 Query 64 CGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAG 99 |||||| |||||| | ||||||||||| | ||||| Sbjct 8824 CGTTATTCGGAATGATTGGGCGTAAAGAGCACGTAG 8789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203156684800