Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq2029 205 3e-50 seq3559 118 4e-24 >seq2029 Length=64692 Score = 205 bits (226), Expect = 3e-50 Identities = 373/535 (70%), Gaps = 17/535 (3%) Strand=Plus/Plus Query 33 TAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGG 92 |||||||||| || |||||||| ||||| ||||||||||| | ||| |||| || Sbjct 53318 TAGACCCGAACCCGGGTGATCTAACCATGACCAGGATGAAGCTTGGGTGACACCAAGTGA 53377 Query 93 AGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152 ||||||||||| || |||||||||||| | ||||||| ||||| ||| ||||||| | Sbjct 53378 AGGTCCGAACCGACCGATGTTGAAAAATCGGCGGATGAGTTGTGGTTAGCGGTGAAATAC 53437 Query 153 TAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAG--GTAGTGCCTCAAGT 210 | | |||| ||| |||||||||||| |||||| || || | || | | | | Sbjct 53438 CAGTCGAACTCGGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGCGCAGCGGTTTA--T 53495 Query 211 ATCAC-CATCGGGGGTAGAGCACTGTTATGGCTAGGG-GGTCATTGCGACTTACCAAACC 268 | | | |||||| ||||||||| || ||| | | ||| ||||||| | Sbjct 53496 AAGGCTGTTTAGGGGTAAAGCACTGTTTCGGTGCGGGCTGCGAAAGCG--GTACCAAATC 53553 Query 269 ATTGCAAACTCCGAATGC--GCATCAGTTTTACCGCGGGAGTGAGGGCATGGGTGCTAAG 326 | |||||||| |||| | | | |||| | |||||| |||| | |||| Sbjct 53554 GTGGCAAACTCTGAATACTAGATACGCTTTTTATAAGCCAGTGAGACGGTGGGGGATAAG 53613 Query 327 GTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAA 386 | | | ||||||| || | || || | |||||||||||| |||||| | ||| Sbjct 53614 CTTCATCGTCGAGAGGGAAACAGCCCAGATCACTAGCTAAGGCCCCAAAATGATCGTTAA 53673 Query 387 GTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATT 446 || || || || || || ||| | ||| | |||| ||| |||| |||||||||| | Sbjct 53674 GT--GACAAAGGAGGTGAGAATGCAGAAACAACCAGGAGGTTTGCTTAGAAGCAGCCA-T 53730 Query 447 CATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGT 506 | |||||||||||||||| |||||||| || ||| || ||| || ||| || || Sbjct 53731 CCTTTAAAGAGTGCGTAATAGCTCACTGGTGGAGCGTTCTTGCGCCGAAAAT-GTCCGGG 53789 Query 507 ATTAAGTTGTCTACCGAAGCAGTGGGATCATTTAT---ATGATCGGTAGGGGAGC 558 | ||| | ||| ||||||| ||||||| ||||| | |||||||||||||| Sbjct 53790 ACTAAATGATCTGCCGAAGCTGTGGGATAGTTTATTAAACTATCGGTAGGGGAGC 53844 >seq3559 Length=35662 Score = 118 bits (130), Expect = 4e-24 Identities = 129/170 (76%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAG 94 |||||||||||||| |||||| |||| |||| |||| | ||| ||| ||||| Sbjct 28193 GACCCGAAACCAAGCGATCTAATCATGAGCAGGTTGAAAAAATGATAATACGTTTTGGAG 28252 Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTA-GGGGTGAAAGGCT 153 | |||||||||| ||| | || | |||||||| |||| || ||||||||| || Sbjct 28253 GACCGAACCCACATCTGTGGCAATAGATGGGGATGACTTGTGATTATGGGGTGAAAAGCC 28312 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGC 203 || | | ||||||||||||||||| ||| ||||| ||||| |||||| || Sbjct 28313 AATCGAGCTTGGAAATAGCTGGTTTTCTGCGAAATCTATTGAGGTAGAGC 28362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689539174400