Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq2029 208 3e-51 seq3559 145 3e-32 >seq2029 Length=64692 Score = 208 bits (230), Expect = 3e-51 Identities = 392/562 (70%), Gaps = 21/562 (4%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||||||| |||| |||||||||||||||| ||| |||||||| | |||||| || Sbjct 55004 TCGACTTGTAGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTACACTCTACGGCTGATTTCC 54945 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||| ||||||||||||||| | |||||||||| |||| ||||| | ||||||||| Sbjct 54944 GTCCAGCCTGAGGGAACCTTTGCACACCTCCGTTACCTTTTAGGAGGTGA-CCGCCCCAG 54886 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGAT-CATGG---GCCAAGGTTAGATAT 176 | ||||| |||||| | | |||| || | | || || |||| ||||| | Sbjct 54885 TCAAACTGCCCACCTGAAAATGTCAAGCGTCCTGCTTCAAGGAACGCCA---TTAGAATT 54829 Query 177 CCACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAAC-CACTAGCGTGGCCGCATC 235 | | | ||||||||| | ||| | ||| | | | | | | || Sbjct 54828 CTAGCTCCTCCAGAGTGGTCTCTCACTGTTGGCTCTAGTTTTCCCAAAAGAAAACTT-TC 54770 Query 236 ATAGTCTCCCACCTATCCTACACAA--ACCGCACCGAATGCCAATACCAAGCTATAGTGA 293 | | |||||||||| || | ||| | || ||||| ||||| |||||||| ||| | Sbjct 54769 AACGCCTCCCACCTAGGCTGCGCAAGAAGAGC-CCGAAC-CCAATTCCAAGCTACAGTCA 54712 Query 294 AGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAAT 352 || | | |||||||| |||| | || | | ||||||| || | | || Sbjct 54711 AGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTAT 54652 Query 353 TTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAA 412 ||||||| | || | ||||||| |||||||||| ||||||| |||||||| Sbjct 54651 TTCACCGAGTCTCTCTCCGAGACAGTGCCCTGATCGTTACGCCTTTCGTGCGGGTCGGAA 54592 Query 413 CTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTG 472 |||||||||||||||||||||||||||||||| ||||||||||| |||||||| || | Sbjct 54591 CTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCG 54532 Query 473 GGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCC 532 |||||||| | | || || | ||| | || | | | || |||||||||| Sbjct 54531 GGGCTTCAGTCGTCAGCTTCTC-CACAA----ATGAATAACCAACTTCT-TTAACCTTCC 54478 Query 533 AGCACCGGGCAGGCGTCAGTCC 554 |||| ||||||||||||| || Sbjct 54477 GGCACTGGGCAGGCGTCAGCCC 54456 >seq3559 Length=35662 Score = 145 bits (160), Expect = 3e-32 Identities = 177/240 (74%), Gaps = 1/240 (0%) Strand=Plus/Minus Query 240 TCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC 299 |||||||||||| ||||||| | | | | |||| || |||||| ||||| | Sbjct 29617 TCTCCCACCTATTCTACACATTCAGACTCTTTTTTCAATGTTAAATTATAGTAAAGGTGC 29558 Query 300 CG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACC 358 ||||||| |||| || ||| ||||||| || | | ||||||||| Sbjct 29557 ATAGGGTCTTACCGTCTACTTTCGGGAACTCCGCATCTTCACGGAGAATTCAATTTCACT 29498 Query 359 GGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACC 418 | | || | ||||||| ||| |||||| || |||||| |||||||||||||||||| Sbjct 29497 GAGATCATGTTGGAGACAGTGGGGAAGTCGTGACACCATTCATGCAGGTCGGAACTTACC 29438 Query 419 CGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTT 478 |||||||||||||||||||||||||| || | |||||| ||||||||||||||| ||| Sbjct 29437 CGACAAGGAATTTCGCTACCTTAGGACCGTCAGAGTTACGGCCGCCGTTTACTGGGCCTT 29378 Score = 82.4 bits (90), Expect = 3e-13 Identities = 97/130 (75%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 3 GACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAA 62 ||||||||||||| |||||| || ||| | | |||| ||| ||| |||||| || Sbjct 29891 GACTTGTAAGTCTTACAGTCAGGCAAGCTTCTACCATTACGCTCTCCAGCTGATTTCCGT 29832 Query 63 CCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTT 122 |||| |||| ||||| | | | |||||||| ||| ||| || ||||||||||| Sbjct 29831 CCAGCTTGAGCTTACCTTCGCACACTTCCGTTACTCTTTAGGA-AGCGACCGCCCCAGTC 29773 Query 123 AAACTACCCA 132 |||||||||| Sbjct 29772 AAACTACCCA 29763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702338713600