Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq2029 179 8e-43 seq288 127 4e-27 >seq2029 Length=64692 Score = 179 bits (198), Expect = 8e-43 Identities = 216/295 (73%), Gaps = 18/295 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| | || ||| ||| | Sbjct 50623 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCAA-----------T 50575 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 | || ||| || | ||||||||||||||| || ||| |||||||||||||||| Sbjct 50574 GC------TTCTTCTCTGAGAAAAGAAGTTTACAACCCATAGG-CCTTCATCCTTCACGC 50522 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || |||||||||||||||||||||||| Sbjct 50521 GGCATTGCTCCGTCAGGCTGTCGCCCATTGCGGAAAATTCCTCACTGCTGCCTCCCGTAG 50462 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | |||||||||| | ||| || Sbjct 50461 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 50402 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATC 295 | | | || ||| ||| ||||| | || || | ||||| |||| |||||| Sbjct 50401 CATTGCCTTGGTAAGCCATTACCTCACCAACAAGCTAATCAGCCGCAAGCCCATC 50347 >seq288 Length=17438 Score = 127 bits (140), Expect = 4e-27 Identities = 136/180 (76%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 116 CACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCC 175 ||||| | | ||||| |||| || ||| |||||| ||||||||||||||||||||| | Sbjct 8944 CACGCGATCTAGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCTCACTGCTGCCGCT 9003 Query 176 CGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTA 235 || | | || ||| |||||||||||| ||| ||||| || | |||||||||| | ||| Sbjct 9004 CGAAAGCGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGATCATCCTCTCAGACCAGCTA 9063 Query 236 TCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATC 295 ||| | |||| ||| ||| |||| | || |||||||||| ||||| | |||| Sbjct 9064 AGGATCTTTGGCTTGGTAGGCTTTTACTCTACCAACTACCTAATCCTACGCAAGCTCATC 9123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068761523200