Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq538 93.3 3e-14 >seq538 Length=19016 Score = 93.3 bits (102), Expect = 3e-14 Identities = 128/177 (72%), Gaps = 4/177 (2%) Strand=Plus/Plus Query 61286 CGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGT 61345 || |||| ||| ||||||||||||||||||||||| ||||| ||||||| ||||||| Sbjct 16322 CGCAGGCCCGTGCCTTCTACGGCTTCCAGATTGCCATTGAGAACATCCACTCCGAGATGT 16381 Query 61346 ACAGTGTTCTCATCGATACGTACATCAGGG--AGCGGGCGGAACGTGAACGATTGTTCAA 61403 |||| | || | || |||||||||| || ||| | ||| | ||| |||| | Sbjct 16382 ACAGCTTGCTTCTGGAGACGTACATCAAGGACAGCCAGGAGAAGGAGAA--GCTGTTTCA 16439 Query 61404 TGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGAT 61460 ||||| |||||| | || | |||| ||| ||| | ||||| | || ||||| Sbjct 16440 CGCCATGGAGACGGTGCCTGTGGTGCGCAAGAAGGCGCACTGGGCAATGAAGTGGAT 16496 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 61678 GAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACT 61737 |||||||||||| ||||||||| |||||||||| | ||||| |||| ||| | | Sbjct 17092 GAGGAGCGTGTGTCTGAGATTGTGAGTGAGGCGGTTGCCATCGAGAAGGAGTTTATCTGT 17151 Query 61738 GACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAA 61797 ||||| ||||||| | ||||||||||| | || ||| |||||| ||||| Sbjct 17152 GACGCGCTGCCCGTGGATTTGATCGGCATGAACAAGGTGCTGATGGGGCAGTACATTGAG 17211 Query 61798 TTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTA---TGAAGCGGATCTATAATACGAAA 61854 || ||| ||||| ||| | || | |||| | |||| | || || | | Sbjct 17212 TTCTGTGCGGACCGGCTGCTAGTGGCGCTGGGCAACCCCAAGCAG---TACAACATGGCC 17268 Query 61855 AACCCATTTGATTTCATGGACATGATTTCGCT 61886 ||||| ||||| | ||||||||||| ||||| Sbjct 17269 AACCCCTTTGACTGGATGGACATGATCTCGCT 17300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397550556704000