Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorella_20vulgaris_20[genbank_20GCA_5F001021125.1_202015-06-05] 3,600 sequences; 37,342,230 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq2029 581 4e-161 >seq2029 Length=64692 Score = 581 bits (644), Expect = 4e-161 Identities = 755/1034 (73%), Gaps = 21/1034 (2%) Strand=Plus/Minus Query 161514 GTTCGATGTCCTTGACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGCTGGTCTGG 161573 ||| ||||| |||| ||||||||| || || |||||||||||||| || ||||| || Sbjct 63379 GTTTGATGTTGTTGATGACTGGCTTCGTCGCGACCGTTTCGTTTTTGTAGGATGGTCAGG 63320 Query 161574 ACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTT 161633 | ||| | || || ||||| |||||||| |||| |||||| |||| || || || || Sbjct 63319 GTTACTTTTATTCCCGACTGCATATCTTGCACTTGGTGGTTGGTTTACAGGAACTACATT 63260 Query 161634 CGCTACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGG-TGCAAATTTTC 161692 | || |||||||| ||||| | |||| ||| ||| | || || || || |||| Sbjct 63259 TGTAACTTCTTGGTATACTCATGGTTTAGCTACTTCATATTTAGAAGGCTGTAA--TTTC 63202 Query 161693 TTA-CAGCGGCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTCTGG 161751 ||| | || || ||| |||||||| | ||||||||||||| | | |||| ||| Sbjct 63201 TTAACTGCTGCGGTTTCTACTCCAGCAAATAGTATGGGTCATTCTTTATTATTTCTTTGG 63142 Query 161752 GGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTT 161811 || || || |||||||| ||||| | ||| ||||||||| || || |||| ||| Sbjct 63141 GGCCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGACTTTC 63082 Query 161812 GTGGCGCTCCACGGGGCTTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTTGCT 161871 || || || ||||| |||| | |||||||| || ||||||||||| |||||| ||||| Sbjct 63081 GTAGCCCTTCACGGTTCTTTTTCACTGATTGGTTTTATGCTTCGTCAATTTGAAATTGCT 63022 Query 161872 CGTCTTATCGGTA----TCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGT 161927 ||| || ||| | ||||| || || || |||||||| |||| ||| ||| |||| Sbjct 63021 CGT----TCAGTAAAAATTCGTCCATATAACGCGATTGCTTTTTCTGCTCCAATTTCTGT 62966 Query 161928 TTTTGTCAGCGTCTTTCTCATATATCCTCTGGGACAGTCGTCCTGGTTCTTCGCGCCATC 161987 ||| || || || || || || || | || || || |||||||| || ||| Sbjct 62965 TTTCGTTTCTGTGTTCCTAATTTACCCATTAGGTCAATCAGGTTGGTTCTTTGCACCAAG 62906 Query 161988 GTTTGGGGTTGCCGCTATTTTCAGGTT---CTTACTTTTCCTACAAGGTTTCCACAATTG 162044 ||||| ||||| || |||||| | || |||| |||| | |||| ||||| || || Sbjct 62905 TTTTGGTGTTGCGGCAATTTTCCGTTTTATCTTATTTTTTC---AAGGCTTCCATAACTG 62849 Query 162045 GACGCTTAATCCGTTCCACATGATGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGCTCTC 162104 ||| | || || ||||| ||||||||||| || ||| | | || | ||| || || | Sbjct 62848 GACTTTAAACCCTTTCCATATGATGGGTGTAGCTGGTGTACTAGGAGCTGCGTTACTTTG 62789 Query 162105 TGCTATTCACGGTGTGACTGTTGAAAACACGCTCTACCAAGATGGTGAACAAGCAAATAC 162164 || ||||| |||| ||||| |||||||| || | |||||||||| ||||| || Sbjct 62788 CGCCATTCATGGTGCTACTGTAGAAAACACACTTTTTGAAGATGGTGATGGTGCAAACAC 62729 Query 162165 TTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAACCG 162224 ||| || ||| || | || |||| || || || ||||| ||||| ||||| ||| | Sbjct 62728 ATTCCGTGCGTTTAACCCAACTCAAGCAGAAGAAACATACTCTATGGTAACTGCTAACAG 62669 Query 162225 TTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTTTAT 162284 || ||||| || ||||| ||| | |||||| |||||| |||||||| || |||||||| Sbjct 62668 ATTTTGGTCTCAAATCTTTGGTGTAGCTTTTTCTAATAAACGTTGGTTACACTTCTTTAT 62609 Query 162285 GCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCT 162344 ||| || ||||| || | || || |||| ||| |||| ||| | | || || ||| | Sbjct 62608 GCTTTTTGTTCCTGTAACAGGGCTTTGGATGAGTGCTATTGGTGTAGTAGGTCTAGCT-T 62550 Query 162345 TAATCTT-CGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAAT 162403 ||| ||| ||||||||||| || || || || || ||||| || || || ||||| |||| Sbjct 62549 TAAACTTACGTGCTTACGATTTCGTTTCACAAGAAATTCGCGCTGCAGAAGATCCAGAAT 62490 Query 162404 TTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGCAC 162463 ||||||| ||||| ||||| |||||||| || || |||||| ||||||| ||| |||| Sbjct 62489 TTGAAACTTTCTATACCAAAAATATCCTTTTAAACGAAGGTATTCGTGCTTGGATGGCTG 62430 Query 162464 CAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCTGCCTAGAGGTAACG 162523 | ||||| || ||||| || |||||||||||||||| ||| | || | || |||| Sbjct 62429 CTCAAGATCAGCCTCATGAAAAACTTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACG 62370 Query 162524 CACTGTGAATGGTT 162537 | || | ||||||| Sbjct 62369 CTCT-TTAATGGTT 62357 Score = 390 bits (432), Expect = 1e-103 Identities = 403/525 (77%), Gaps = 2/525 (0%) Strand=Plus/Minus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 || || |||||||| ||| || | ||||| | || |||||||||| || || | Sbjct 32746 TTTTGTGAGTGGGTTACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 32687 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 159921 ||||| || ||| | || | |||||| || | || ||| |||| || ||||| || || Sbjct 32686 ATGATTCCTACTTTATTAACTGCAACT-TCAGTGTTTATCATCGCTTTTATCGCAGCACC 32628 Query 159922 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAA 159981 ||||| || |||||||| |||||||| || || |||||||||| | ||||| ||||| Sbjct 32627 TCCTGTTGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCACTTTTATACGGAAACAA 32568 Query 159982 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 160041 |||||| |||||||| || |||| |||| |||||||| ||| | || ||||| || || Sbjct 32567 CATCATTTCTGGTGCTATTATTCCTACTTCTAACGCAATCGGTTTACATTTCTACCCTAT 32508 Query 160042 TTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGT 160101 ||||||||| || || || ||||| ||| | || ||||||||||||| |||||| | || Sbjct 32507 TTGGGAAGCAGCTTCTCTTGACGAATGGTTATACAACGGTGGTCCTTACCAACTTATCGT 32448 Query 160102 CTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCG 160161 | || ||| | | || |||| | | || |||||||||||||||||| | |||| ||| Sbjct 32447 TTGTCATTTCTTCTTAGGAATCTGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCG 32388 Query 160162 TCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGC 160221 | | ||||||||||| ||||| ||||| ||||| || ||||| ||||| || | || Sbjct 32387 TTTAGGTATGCGTCCATGGATTGCAGTTGCTTACTCAGCACCAGTTGCTGCAGCAACAGC 32328 Query 160222 TGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 160281 ||||||| || ||||||| ||||||| ||||||||||| |||| ||||||| | ||||| Sbjct 32327 TGTATTCATCATCTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCTTTAGGTAT 32268 Query 160282 CTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAA 160326 |||||||| ||||||| ||| | ||||||||||| || || || Sbjct 32267 TTCTGGTACATTTAACTTCATGATCGTATTCCAAGCTGAGCATAA 32223 Score = 354 bits (392), Expect = 9e-93 Identities = 348/449 (78%), Gaps = 0/449 (0%) Strand=Plus/Minus Query 160325 AATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTG 160384 || || || ||||| || ||||| ||||| || ||||| || ||||| ||||| || | Sbjct 31300 AACATTCTAATGCACCCATTCCATATGCTAGGCGTTGCCGGTGTATTTGGTGGTTCATTA 31241 Query 160385 TTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACT 160444 |||||||||||||| || || || || |||||| ||| | | || || || || | Sbjct 31240 TTCTCTGCTATGCACGGTTCACTTGTAACTTCTTCTCTAATTCGTGAAACAACTGAGAAC 31181 Query 160445 GAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCA 160504 || || ||| | |||||||| ||||||||||| ||||| |||||||||||||| ||| Sbjct 31180 GAATCAGCTAACGAAGGTTACAAATTCGGTCAAGAAGAAGAAACTTACAACATCGTTGCA 31121 Query 160505 GCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCT 160564 || |||||||||||||||||||| || |||||||| || || ||||||||||| || || Sbjct 31120 GCTCATGGCTACTTCGGTCGTTTAATTTTCCAATACGCTTCTTTTAACAACTCTCGTTCA 31061 Query 160565 CTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTT 160624 | || |||||| | ||||||||||| |||||||| || ||||| ||||| | ||| || Sbjct 31060 TTACATTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATT 31001 Query 160625 TCTACCATGGCATTCAATCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAA 160684 || || ||||| ||||| | |||||||||||||||||||| || | | || ||| Sbjct 31000 TCAACTATGGCTTTCAACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAA 30941 Query 160685 GGACAAGTTCTGAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTC 160744 || | ||| | ||||||||||| ||| | | ||||| || || || |||||||| Sbjct 30940 GGCCGTGTTATTAACACTTGGGCTGACATTATCAACCGTGCCAACCTTGGTATGGAAGTA 30881 Query 160745 ATGCACGAGCGTAACGCTCACAACTTCCC 160773 ||||| ||||||||||||||||||||||| Sbjct 30880 ATGCATGAGCGTAACGCTCACAACTTCCC 30852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551351188080000