Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq89 298 8e-79 seq88 298 8e-79 >seq89 Length=1719426 Score = 298 bits (330), Expect = 8e-79 Identities = 210/236 (89%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| || ||||||||| |||||||||||| ||||||| ||| | Sbjct 1246238 GTACAAAGGGCAGGGACGTAATCGACGCGAGCT-GATGACTCGCGCCTACTAGGCATT-C 1246295 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||||||||| || ||||||||| ||||||||||||||||||| ||| ||||||| Sbjct 1246296 CTCGTTGAAGATTAATAATTGCAATAATCTATCCCCATCACGATGCGGTTTGCAAGATTA 1246355 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 |||||||||||||||||||| ||| |||||||| |||||||||||||||||||||| Sbjct 1246356 CCCGGACCTGTCGGCCAAGGC--TAGGCTCGTTGATCGCATCAGTGTAGCGCGCGTGCGG 1246413 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTA 236 ||||||||||||||||||||||||||||||||||||||||| |||||| | | ||| Sbjct 1246414 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCACACTTCCATTGGCTA 1246469 Score = 298 bits (330), Expect = 8e-79 Identities = 210/236 (89%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| || ||||||||| |||||||||||| ||||||| ||| | Sbjct 1292576 GTACAAAGGGCAGGGACGTAATCGACGCGAGCT-GATGACTCGCGCCTACTAGGCATT-C 1292519 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||||||||| || ||||||||| ||||||||||||||||||| ||| ||||||| Sbjct 1292518 CTCGTTGAAGATTAATAATTGCAATAATCTATCCCCATCACGATGCGGTTTGCAAGATTA 1292459 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 |||||||||||||||||||| ||| |||||||| |||||||||||||||||||||| Sbjct 1292458 CCCGGACCTGTCGGCCAAGGC--TAGGCTCGTTGATCGCATCAGTGTAGCGCGCGTGCGG 1292401 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTA 236 ||||||||||||||||||||||||||||||||||||||||| |||||| | | ||| Sbjct 1292400 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCACACTTCCATTGGCTA 1292345 >seq88 Length=702383 Score = 298 bits (330), Expect = 8e-79 Identities = 210/236 (89%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| || ||||||||| |||||||||||| ||||||| ||| | Sbjct 587501 GTACAAAGGGCAGGGACGTAATCGACGCGAGCT-GATGACTCGCGCCTACTAGGCATT-C 587444 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||||||||| || ||||||||| ||||||||||||||||||| ||| ||||||| Sbjct 587443 CTCGTTGAAGATTAATAATTGCAATAATCTATCCCCATCACGATGCGGTTTGCAAGATTA 587384 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 |||||||||||||||||||| ||| |||||||| |||||||||||||||||||||| Sbjct 587383 CCCGGACCTGTCGGCCAAGGC--TAGGCTCGTTGATCGCATCAGTGTAGCGCGCGTGCGG 587326 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTA 236 ||||||||||||||||||||||||||||||||||||||||| |||||| | | ||| Sbjct 587325 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCACACTTCCATTGGCTA 587270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751999227790