Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq92 251 1e-64 seq89 251 1e-64 seq88 251 1e-64 >seq92 Length=1443051 Score = 251 bits (278), Expect = 1e-64 Identities = 205/245 (84%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGC-TCGAATACATTAGCATGGA 133 ||||||||| ||||||||||||||||||||||| | || | |||||| |||||||||| Sbjct 143575 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAGGCATCCGCCTTGAATACGTTAGCATGGA 143516 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | ||||||| | | |||| |||||||| | | |||||| ||||||||||| Sbjct 143515 ATAACACGATAGGACT--CTGGCCTATCTTGTTGGTCTGTGGGACCGGAGTAATGATTAA 143458 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 ||||| ||||||||| | ||||| ||||||||||||||||||||||||||||| | Sbjct 143457 GAGGGACAGTCGGGGGCATTCGTATTTCATTGTCAGAGGTGAAATTCTTGGATTTATGAA 143398 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||| ||||||||||||||| || |||||||||||||||||||||| ||||||||||| Sbjct 143397 AGACGAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 143339 Query 314 AGGGG 318 |||| Sbjct 143338 GGGGG 143334 >seq89 Length=1719426 Score = 251 bits (278), Expect = 1e-64 Identities = 205/245 (84%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGC-TCGAATACATTAGCATGGA 133 ||||||||| ||||||||||||||||||||||| | || | |||||| |||||||||| Sbjct 1247124 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAGGCATCCGCCTTGAATACGTTAGCATGGA 1247065 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | ||||||| | | |||| |||||||| | | |||||| ||||||||||| Sbjct 1247064 ATAACACGATAGGACT--CTGGCCTATCTTGTTGGTCTGTGGGACCGGAGTAATGATTAA 1247007 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 ||||| ||||||||| | ||||| ||||||||||||||||||||||||||||| | Sbjct 1247006 GAGGGACAGTCGGGGGCATTCGTATTTCATTGTCAGAGGTGAAATTCTTGGATTTATGAA 1246947 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||| ||||||||||||||| || |||||||||||||||||||||| ||||||||||| Sbjct 1246946 AGACGAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 1246888 Query 314 AGGGG 318 |||| Sbjct 1246887 GGGGG 1246883 Score = 251 bits (278), Expect = 1e-64 Identities = 205/245 (84%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGC-TCGAATACATTAGCATGGA 133 ||||||||| ||||||||||||||||||||||| | || | |||||| |||||||||| Sbjct 1291690 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAGGCATCCGCCTTGAATACGTTAGCATGGA 1291749 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | ||||||| | | |||| |||||||| | | |||||| ||||||||||| Sbjct 1291750 ATAACACGATAGGACT--CTGGCCTATCTTGTTGGTCTGTGGGACCGGAGTAATGATTAA 1291807 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 ||||| ||||||||| | ||||| ||||||||||||||||||||||||||||| | Sbjct 1291808 GAGGGACAGTCGGGGGCATTCGTATTTCATTGTCAGAGGTGAAATTCTTGGATTTATGAA 1291867 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||| ||||||||||||||| || |||||||||||||||||||||| ||||||||||| Sbjct 1291868 AGACGAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 1291926 Query 314 AGGGG 318 |||| Sbjct 1291927 GGGGG 1291931 >seq88 Length=702383 Score = 251 bits (278), Expect = 1e-64 Identities = 205/245 (84%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGC-TCGAATACATTAGCATGGA 133 ||||||||| ||||||||||||||||||||||| | || | |||||| |||||||||| Sbjct 586615 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAGGCATCCGCCTTGAATACGTTAGCATGGA 586674 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 |||| | ||||||| | | |||| |||||||| | | |||||| ||||||||||| Sbjct 586675 ATAACACGATAGGACT--CTGGCCTATCTTGTTGGTCTGTGGGACCGGAGTAATGATTAA 586732 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 ||||| ||||||||| | ||||| ||||||||||||||||||||||||||||| | Sbjct 586733 GAGGGACAGTCGGGGGCATTCGTATTTCATTGTCAGAGGTGAAATTCTTGGATTTATGAA 586792 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||| ||||||||||||||| || |||||||||||||||||||||| ||||||||||| Sbjct 586793 AGACGAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTT 586851 Query 314 AGGGG 318 |||| Sbjct 586852 GGGGG 586856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915199029888