Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq89 293 1e-76 seq88 293 1e-76 seq92 206 1e-50 >seq89 Length=1719426 Score = 293 bits (324), Expect = 1e-76 Identities = 476/668 (71%), Gaps = 24/668 (4%) Strand=Plus/Minus Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85 || || | |||| |||||| |||||||||||||||||| | || || ||||| | | Sbjct 1245075 GAGGCGCTTTCGCAGAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCAGGTGGTAAGTCCC 1245016 Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145 ||||| |||||||| || | ||||||||||||| ||||||| |||| ||||||||| Sbjct 1245015 ATCTAAGGCTAAATACTGACGGGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGA 1244956 Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCA 205 |||| |||||| |||||||||||||||| | ||||||||||| |||||| | ||| | Sbjct 1244955 AAAGAACTTTGAAAAGAGAGTTAAAAAGTGCTTGAAATTGTTGGGGGGGAAGGGATTGGA 1244896 Query 206 ACCAGACT-TGCCCGCAGTTGCTCAA-CCGGCCCCTCGGCCGG-TGCACTCTTCTGCGGT 262 | ||| | ||| ||| | ||||| | ||||| || | | ||| | Sbjct 1244895 GGTCGCGGGTGCGCCCAG--GCTGACGCCGGCTTTGCCGCCGGCTGTATGCG-CTGGGTG 1244839 Query 263 CAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGC--CCCGGGAATGTGGCCCCCT---T 317 | || ||||||| | | | ||| ||| || || ||| || | ||| ||| | Sbjct 1244838 CTGGTCAGCATCGGTTAGCTCGGCGGGACAACCGCGGCCCTTGACCG--GCCGCCTCTGT 1244781 Query 318 CGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGG 377 || ||| || | ||| || | | | ||| | || || || || | || || Sbjct 1244780 CGCCGGG-GTGA----CCGAGGACGGAAG-GGCGCCCCAGGCCTTCGGGACCTGCGCCCT 1244727 Query 378 CTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTA 437 || ||||||||||| || | | || | |||||||||| ||||||||||||||||| | Sbjct 1244726 CT-GGATGCTGGCGGAAGGCCTCCAATCTGCCCGTCTTGAAACACGGACCAAGGAGTACA 1244668 Query 438 ACATCTATGCGAGTGTTTGGGTGT-CAAACCCGTGC-GCGTAATGAAAGTGAACGGAGGT 495 || | ||||||| |||| | || ||| | ||| || || ||| | | || Sbjct 1244667 ACGTGCATGCGAGCTGGTGGGCGAGCAGCCCCACGAAGCGCAAGCAACCTGACCCG--GT 1244610 Query 496 GGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAG 555 |||| | || | ||||||||| ||||| | |||| | | || | ||||||| | Sbjct 1244609 GGGATGGCCTGTGCCTGCACCATCAACCGACCATGATCTTCTGTGAAAGGTTTGAGTGCG 1244550 Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 ||||| ||||| |||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 1244549 AGCATGTTTGTTGTGACCCGAAAGATGGTGAACTATGCCTGAGCAGGGCGAAGCCAGAGG 1244490 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 ||||||||||||||||||| || || ||| ||||||||||| | || | |||||||| Sbjct 1244489 AAACTCTGGTGGAGGCTCGTAGATGTGCTGACGTGCAAATCGCTTTTCGGACTTGGGTAT 1244430 Query 676 AGGGGCGA 683 |||||||| Sbjct 1244429 AGGGGCGA 1244422 Score = 293 bits (324), Expect = 1e-76 Identities = 476/668 (71%), Gaps = 24/668 (4%) Strand=Plus/Plus Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85 || || | |||| |||||| |||||||||||||||||| | || || ||||| | | Sbjct 1293739 GAGGCGCTTTCGCAGAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCAGGTGGTAAGTCCC 1293798 Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145 ||||| |||||||| || | ||||||||||||| ||||||| |||| ||||||||| Sbjct 1293799 ATCTAAGGCTAAATACTGACGGGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGA 1293858 Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCA 205 |||| |||||| |||||||||||||||| | ||||||||||| |||||| | ||| | Sbjct 1293859 AAAGAACTTTGAAAAGAGAGTTAAAAAGTGCTTGAAATTGTTGGGGGGGAAGGGATTGGA 1293918 Query 206 ACCAGACT-TGCCCGCAGTTGCTCAA-CCGGCCCCTCGGCCGG-TGCACTCTTCTGCGGT 262 | ||| | ||| ||| | ||||| | ||||| || | | ||| | Sbjct 1293919 GGTCGCGGGTGCGCCCAG--GCTGACGCCGGCTTTGCCGCCGGCTGTATGCG-CTGGGTG 1293975 Query 263 CAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGC--CCCGGGAATGTGGCCCCCT---T 317 | || ||||||| | | | ||| ||| || || ||| || | ||| ||| | Sbjct 1293976 CTGGTCAGCATCGGTTAGCTCGGCGGGACAACCGCGGCCCTTGACCG--GCCGCCTCTGT 1294033 Query 318 CGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGG 377 || ||| || | ||| || | | | ||| | || || || || | || || Sbjct 1294034 CGCCGGG-GTGA----CCGAGGACGGAAG-GGCGCCCCAGGCCTTCGGGACCTGCGCCCT 1294087 Query 378 CTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTA 437 || ||||||||||| || | | || | |||||||||| ||||||||||||||||| | Sbjct 1294088 CT-GGATGCTGGCGGAAGGCCTCCAATCTGCCCGTCTTGAAACACGGACCAAGGAGTACA 1294146 Query 438 ACATCTATGCGAGTGTTTGGGTGT-CAAACCCGTGC-GCGTAATGAAAGTGAACGGAGGT 495 || | ||||||| |||| | || ||| | ||| || || ||| | | || Sbjct 1294147 ACGTGCATGCGAGCTGGTGGGCGAGCAGCCCCACGAAGCGCAAGCAACCTGACCCG--GT 1294204 Query 496 GGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAG 555 |||| | || | ||||||||| ||||| | |||| | | || | ||||||| | Sbjct 1294205 GGGATGGCCTGTGCCTGCACCATCAACCGACCATGATCTTCTGTGAAAGGTTTGAGTGCG 1294264 Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 ||||| ||||| |||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 1294265 AGCATGTTTGTTGTGACCCGAAAGATGGTGAACTATGCCTGAGCAGGGCGAAGCCAGAGG 1294324 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 ||||||||||||||||||| || || ||| ||||||||||| | || | |||||||| Sbjct 1294325 AAACTCTGGTGGAGGCTCGTAGATGTGCTGACGTGCAAATCGCTTTTCGGACTTGGGTAT 1294384 Query 676 AGGGGCGA 683 |||||||| Sbjct 1294385 AGGGGCGA 1294392 >seq88 Length=702383 Score = 293 bits (324), Expect = 1e-76 Identities = 476/668 (71%), Gaps = 24/668 (4%) Strand=Plus/Plus Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85 || || | |||| |||||| |||||||||||||||||| | || || ||||| | | Sbjct 588664 GAGGCGCTTTCGCAGAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCAGGTGGTAAGTCCC 588723 Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145 ||||| |||||||| || | ||||||||||||| ||||||| |||| ||||||||| Sbjct 588724 ATCTAAGGCTAAATACTGACGGGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGA 588783 Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCA 205 |||| |||||| |||||||||||||||| | ||||||||||| |||||| | ||| | Sbjct 588784 AAAGAACTTTGAAAAGAGAGTTAAAAAGTGCTTGAAATTGTTGGGGGGGAAGGGATTGGA 588843 Query 206 ACCAGACT-TGCCCGCAGTTGCTCAA-CCGGCCCCTCGGCCGG-TGCACTCTTCTGCGGT 262 | ||| | ||| ||| | ||||| | ||||| || | | ||| | Sbjct 588844 GGTCGCGGGTGCGCCCAG--GCTGACGCCGGCTTTGCCGCCGGCTGTATGCG-CTGGGTG 588900 Query 263 CAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGC--CCCGGGAATGTGGCCCCCT---T 317 | || ||||||| | | | ||| ||| || || ||| || | ||| ||| | Sbjct 588901 CTGGTCAGCATCGGTTAGCTCGGCGGGACAACCGCGGCCCTTGACCG--GCCGCCTCTGT 588958 Query 318 CGGGGGGTGTTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGG 377 || ||| || | ||| || | | | ||| | || || || || | || || Sbjct 588959 CGCCGGG-GTGA----CCGAGGACGGAAG-GGCGCCCCAGGCCTTCGGGACCTGCGCCCT 589012 Query 378 CTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTA 437 || ||||||||||| || | | || | |||||||||| ||||||||||||||||| | Sbjct 589013 CT-GGATGCTGGCGGAAGGCCTCCAATCTGCCCGTCTTGAAACACGGACCAAGGAGTACA 589071 Query 438 ACATCTATGCGAGTGTTTGGGTGT-CAAACCCGTGC-GCGTAATGAAAGTGAACGGAGGT 495 || | ||||||| |||| | || ||| | ||| || || ||| | | || Sbjct 589072 ACGTGCATGCGAGCTGGTGGGCGAGCAGCCCCACGAAGCGCAAGCAACCTGACCCG--GT 589129 Query 496 GGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAG 555 |||| | || | ||||||||| ||||| | |||| | | || | ||||||| | Sbjct 589130 GGGATGGCCTGTGCCTGCACCATCAACCGACCATGATCTTCTGTGAAAGGTTTGAGTGCG 589189 Query 556 AGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGG 615 ||||| ||||| |||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 589190 AGCATGTTTGTTGTGACCCGAAAGATGGTGAACTATGCCTGAGCAGGGCGAAGCCAGAGG 589249 Query 616 AAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTAT 675 ||||||||||||||||||| || || ||| ||||||||||| | || | |||||||| Sbjct 589250 AAACTCTGGTGGAGGCTCGTAGATGTGCTGACGTGCAAATCGCTTTTCGGACTTGGGTAT 589309 Query 676 AGGGGCGA 683 |||||||| Sbjct 589310 AGGGGCGA 589317 >seq92 Length=1443051 Score = 206 bits (228), Expect = 1e-50 Identities = 231/305 (76%), Gaps = 4/305 (1%) Strand=Plus/Minus Query 381 GGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACA 440 ||||||||||| || | | || | |||||||||| ||||||||||||||||| ||| Sbjct 135531 GGATGCTGGCGGAAGGCCTCCAATCTGCCCGTCTTGAAACACGGACCAAGGAGTACAACG 135472 Query 441 TCTATGCGAGTGTTTGGGTGT-CAAACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGG 498 | ||||||| |||| | || ||| | ||| || || ||| | | ||||| Sbjct 135471 TGCATGCGAGCTGGTGGGCGAGCAGCCCCACGAAGCGCAAGCAACCTGACCCG--GTGGG 135414 Query 499 AACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGC 558 | | || | ||||||||| ||||| | |||| | | || | ||||||| |||| Sbjct 135413 ATGGCCTGTGCCTGCACCATCAACCGACCATGATCTTCTGTGAAAGGTTTGAGTGCGAGC 135354 Query 559 ATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAA 618 || ||||| |||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 135353 ATGTTTGTTGTGACCCGAAAGATGGTGAACTATGCCTGAGCAGGGCGAAGCCAGAGGAAA 135294 Query 619 CTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGG 678 |||||||||||||||| || || ||| ||||||||||| | || | ||||||||||| Sbjct 135293 CTCTGGTGGAGGCTCGTAGATGTGCTGACGTGCAAATCGCTTTTCGGACTTGGGTATAGG 135234 Query 679 GGCGA 683 ||||| Sbjct 135233 GGCGA 135229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079997726300