Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq18 221 3e-55 seq15 114 3e-23 >seq18 Length=145863 Score = 221 bits (244), Expect = 3e-55 Identities = 294/403 (73%), Gaps = 9/403 (2%) Strand=Plus/Minus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||||| ||||||||| |||||||||||||||||||||||| ||| ||||||||||| Sbjct 28093 GAATAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATGCAAGCGTTA 28034 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGG-TTGTGTAAGACAGGTGTGAAATCC 129 |||| | | ||||||||||| || | ||| || ||| | || | ||||||| | Sbjct 28033 TCCGGATTCATTGGGCGTAAAGGGTCCTGAGGTGGCCTGT-TTAGTCTACTGTGAAAGCT 27975 Query 130 CCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGT 189 | |||||||||| | | ||| | | |||| | ||||| | | || || | Sbjct 27974 CAGGGCTTAACCCTGACAATGCGGTGGAAACTGGCAGGCTAGAATACGGTAGGGGCAAGG 27915 Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||||||| ||||||| ||||||||| ||||||| ||||||||||||| ||||||||| Sbjct 27914 GGAATTCCCAGTGTAGCGGTGAAATGCATAGATATTGGGAGGAACACCAAAGGCGAAGGC 27855 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 | | ||||| | |||| || | |||||||| |||||| || | |||||||| Sbjct 27854 ACCTTGCTGGGCCGCTATTGACACTGACAGACGAAAGCCAGGGGAGTAACCCGGATTAGA 27795 Query 310 TACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTG-GGGATTTA---CTTCC 365 ||||| | || ||| || |||||||| |||| ||||| |||| | ||| Sbjct 27794 TACCCGGCTAATCCTGGCTGTAAACGATGGACACTAAGTGTTGAACGATTCAAACGTTCA 27735 Query 366 TTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATA 408 || | | ||||||||||| |||| ||||||||||| || Sbjct 27734 GTGCT---GCAGCTAACGCGTTAAGTGTCCCGCCTGGGGAGTA 27695 >seq15 Length=69663 Score = 114 bits (126), Expect = 3e-23 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 180 AGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAA 239 ||||||| |||||||||| | | || ||||||| | ||| | ||||||| || | Sbjct 49613 AGAGGGGAGTGGAATTCCTGGAGGAGAGGTGAAATTCACAGAGACCAGGAGGAAGGCCGA 49672 Query 240 TGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAA 299 |||||||||| | |||| | |||||||| | | |||||||||||| | |||| Sbjct 49673 CGGCGAAGGCATCTCCCTAGCCCTTAGCTGACGCTGAGGTGCGAAAGCGTGGGTATCAAA 49732 Query 300 CAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||| ||||| |||||||||||||| |||||| Sbjct 49733 GAGGATTAGAGACCCTTGTAGTCCACGCCCTCAACGAT 49770 Score = 107 bits (118), Expect = 5e-21 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 4 ACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCA 63 || ||||| | ||| |||||||||| |||||||||||||||||||||||| ||| || Sbjct 49019 ACTTGAAGGAAAAGTCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGGGGGGGCG 49078 Query 64 AGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGG 105 ||||||| |||||||||||||||||||| | | |||||| Sbjct 49079 AGCGTTATCCGGAATTACTGGGCGTAAAGGGCATGTAGGCGG 49120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289598633024