Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq18 131 2e-28 seq15 109 8e-22 >seq18 Length=145863 Score = 131 bits (144), Expect = 2e-28 Identities = 173/243 (71%), Gaps = 23/243 (9%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||||||||||||||||| || ||| | | ||| | | ||| || |||| Sbjct 35715 CCTTCCGGCACCGGGCAGGCGTCAGCCCCCATATGTTGTCTTGC-GACTTAGCGGAGACC 35773 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| | || || ||||| || || Sbjct 35774 TGTGTTTTTGGTAAACAGTCGCCTGGGCCTGGTCACTGCGGCCCCC-------------- 35819 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 || || | ||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 35820 ---TT-----GCGGGGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAGTTCCT 35871 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| |||||||||||| | |||||||||||||| | Sbjct 35872 TAGAGAGAGTTATCTCGCGCCCCTAGGTATTCTCTACCCACCTACCTGTGTCGGTTTGGG 35931 Query 246 GTA 248 ||| Sbjct 35932 GTA 35934 >seq15 Length=69663 Score = 109 bits (120), Expect = 8e-22 Identities = 190/277 (69%), Gaps = 41/277 (15%) Strand=Plus/Minus Query 10 CCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTG 69 ||| ||||||||||||||||| || |||| ||| || || ||| || | |||||| Sbjct 45486 CCAGCACCGGGCAGGCGTCAGACCCAATACGTCGTGTTGCCA-CTTTGCTGAGTCCTGTG 45428 Query 70 TTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACC------AC--------CACCA 115 |||||| ||||||||||| ||| ||||||| || ||| || ||| | Sbjct 45427 TTTTTATTAAACAGTCGCCACCCCCTATTCTGTGACACCCTGCCTACGCCAATTGCACTA 45368 Query 116 ----GCT--------CAACACGTCGTTCACCA------------GCAGTGGCACCCCTTC 151 ||| ||||| | || || || |||| ||| |||||| Sbjct 45367 AGTTGCTATCAATAGCAACATGGTGTGCAACAATGTAATGGGTTGCAG-GGCCCCCCTTT 45309 Query 152 TCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTA 211 |||||||||||||||| || |||||||| |||||| | ||||||| | | | | |||| Sbjct 45308 TCCCGAAGTTACGGGGTCAATTTGCCGAGTTCCTTCAACACAGTTGTCTCTACCACCTTG 45249 Query 212 GTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || ||||| ||||| ||||| |||| |||||| |||| Sbjct 45248 GTCTTCTCGACCTGTCCACCAGTGTTGGTTTA-GGTA 45213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694399286938