Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq18 280 4e-73 seq15 208 2e-51 >seq18 Length=145863 Score = 280 bits (310), Expect = 4e-73 Identities = 306/411 (74%), Gaps = 28/411 (7%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | || || ||||||| ||||||| ||||||| ||| |||||| Sbjct 35527 GCATCTTCACGGACATGTCTATTTCACCGAGTCTCTCTCTGAGACAGTGCCCAGATCGTT 35586 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 35587 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 35646 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA--GCTAACCCCA 190 | ||||||||||||||| |||||||||||| || |||||| | | | | ||||| Sbjct 35647 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCAGCTTCTCCTAAAGGATAACCAAC 35706 Query 191 TCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGC 250 | || ||||||||||||||||||||||||| ||| ||| || ||| || || || Sbjct 35707 TTCCTTCACCTTCCGGCACCGGGCAGGCGTCAGCCCCCATATGTTGTCTTGCGACTTAGC 35766 Query 251 AGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCT 310 ||| |||||||||| ||||||||||| |||||||| || || || || Sbjct 35767 GGAGACCTGTGTTTTTGGTAAACAGTCGCCTGGGCCTGGTCACTGCGGCC------CCCT 35820 Query 311 TACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTT 370 | ||| ||| | ||||||||||||||||||| ||| |||| Sbjct 35821 TGCGG--------------------GGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTT 35860 Query 371 GCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCA 421 ||| |||||||| ||||| |||| || ||| ||||||||||||||| Sbjct 35861 GCCGAGTTCCTTAGAGAGAGTTATCTCGCGCCCCTAGGTATTCTCTACCCA 35911 >seq15 Length=69663 Score = 208 bits (230), Expect = 2e-51 Identities = 215/284 (76%), Gaps = 17/284 (6%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||| ||| | ||||||||||||||||||||| | ||||||||||| || |||| Sbjct 45693 GCATCTGCACGGAGATTTCAATTTCACTGAGTCTGTGTTGGAGACAGCGGGGCAGTCGTG 45634 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||||||| ||| |||| ||||||||| ||||||||||||||||||||||||||||| | Sbjct 45633 ACGCCATTCATGCGGGTCAGAACTTACCTGACAAGGAATTTCGCTACCTTAGGACCGTCA 45574 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT-----------TCG------ 175 |||||||||||||||||| || |||| | |||||| ||| Sbjct 45573 GAGTTACGGCCGCCGTTTACTGGACCTTCAGTTGAGAGCTATTGCACTGTATCGGAAACA 45514 Query 176 CGTTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTC 235 || | ||||| | || | | || ||||||||||||||||| |||| ||||||| Sbjct 45513 AGTGCCGTCACCCCTCCCCTTTAGTTGCCAGCACCGGGCAGGCGTCAGACCCAATACGTC 45454 Query 236 CACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGC 279 || | ||||| |||| ||||||||||| ||||||||||| Sbjct 45453 GTGTTGCCACTTTGCTGAGTCCTGTGTTTTTATTAAACAGTCGC 45410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260798663552