Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq18 363 3e-98 seq15 219 9e-55 >seq18 Length=145863 Score = 363 bits (402), Expect = 3e-98 Identities = 294/354 (83%), Gaps = 9/354 (3%) Strand=Plus/Plus Query 4 CCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATC 63 || |||||||||| | || | |||||||||||||| | |||||||||||||| ||| Sbjct 35524 CCCGCATCTTCACGGACATGTCTATTTCACCGAGTCTCTCTCTGAGACAGTGCCCAGATC 35583 Query 64 GTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCG 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 35584 GTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCG 35643 Query 124 TTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCT-----CTA 178 | |||||||||||||||||| || ||||||| || | ||||| | || || Sbjct 35644 TCATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCAGCTTC---TCCTAAAGGATA 35700 Query 179 ACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 || | |||| ||||||| ||||||||||||||||||| || ||| | ||||||||| Sbjct 35701 ACCAACTTCCTTCACCTTCCGGCACCGGGCAGGCGTCAGCCCCCATATGTTGTCTTGCGA 35760 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298 |||||| || ||||||||||||||||||||||||| ||||||| || |||||||| | Sbjct 35761 CTTAGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCTGGGCCTGGTCACTGCGGCC-CCC 35819 Query 299 ATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 | ||||||||||||||| ||||||||||| ||||||||||||||||||| Sbjct 35820 TTGCGGGGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAGTTCCTTA 35873 >seq15 Length=69663 Score = 219 bits (242), Expect = 9e-55 Identities = 227/300 (76%), Gaps = 17/300 (6%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||| ||| | |||| ||||||||| |||||| | | ||||||| | | |||| Sbjct 45693 GCATCTGCACGGAGATTTCAATTTCACTGAGTCTGTGTTGGAGACAGCGGGGCAGTCGTG 45634 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||| ||| |||||||| ||||||||| ||||||||||||||||||||||||||||| | Sbjct 45633 ACGCCATTCATGCGGGTCAGAACTTACCTGACAAGGAATTTCGCTACCTTAGGACCGTCA 45574 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTT-----------CACTGCTTCG------ 169 |||||||||||||||||||||| ||| |||| ||||| ||| Sbjct 45573 GAGTTACGGCCGCCGTTTACTGGACCTTCAGTTGAGAGCTATTGCACTGTATCGGAAACA 45514 Query 170 ATTGCTCTAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATC 229 | ||| | || ||||||| | | ||||||||||||||||||||| || |||| || Sbjct 45513 AGTGCCGTCACCCCTCCCCTTTAGTTGCCAGCACCGGGCAGGCGTCAGACCCAATACGTC 45454 Query 230 GTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTG 289 || |||| |||| || || ||||||||||| ||||||||||| |||||||| || Sbjct 45453 GTGTTGCCACTTTGCTGAGTCCTGTGTTTTTATTAAACAGTCGCCACCCCCTATTCTGTG 45394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062398873856