Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq15 172 2e-40 seq18 159 1e-36 >seq15 Length=69663 Score = 172 bits (190), Expect = 2e-40 Identities = 170/220 (77%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 268 ACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGA 327 |||||| |||| | || ||||||||| | ||| ||||||| || ||||| |||||||| Sbjct 50614 ACTGCCTGTGATATACAGGAGGAAGGCGAGGATAACGTCAAGTCGTCATGACCCTTATGG 50673 Query 328 TTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAG 387 ||||||||||||||| |||||||| | |||||||| ||| | || || || Sbjct 50674 GCTGGGCTACACACGTGTTACAATGGCGACCACAAAGGGAAGCAATGATGCAAGTCGGAG 50733 Query 388 CAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCT 447 | ||||| | ||| | |||||||||||||| |||||||||||| |||||| | Sbjct 50734 CGAATCCTAGAAAAGTCGCCTCAGTTCGGATTGCTCTCTGCAACTCGAGAGCATGAAGAT 50793 Query 448 GGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAAT 487 |||||| ||||||||||| |||||||| || ||||||||| Sbjct 50794 GGAATCACTAGTAATCGTGGATCAGCACGCCACGGTGAAT 50833 Score = 165 bits (182), Expect = 2e-38 Identities = 176/233 (76%), Gaps = 21/233 (9%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||| | ||||||||||||| ||||||| ||| ||||| |||||| ||| Sbjct 50086 TACGGCCGCAAGGCTAGAACTCAAAGGAATAGACGGGGGCCCATACAAGTGGTGGAACAT 50145 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 ||||||||||||||| ||||||| | |||||||||| |||||||| || Sbjct 50146 GTGGTTTAATTCGAAACAACGCGCAAAACCTTACCAGCCCTTGACAT----TG------- 50194 Query 121 TAGAGATAGAGGTTTCCCCTT-CGGGGGACA-----GAGTGACAGGTGATGCATGGTTGT 174 | | ||| | |||||| | ||| | | | ||||||| ||||||| ||| Sbjct 50195 ----GTTTGAGTCTACCCCTTACAGGGTAGAAAAGCAACCAACAGGTGTTGCATGGCTGT 50250 Query 175 CGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 |||||||||||||||||||||||| ||||| ||| ||||||||||||||| Sbjct 50251 CGTCAGCTCGTGTCGTGAGATGTTTGGTTAGTTCCTTTAACGAGCGCAACCCT 50303 >seq18 Length=145863 Score = 159 bits (176), Expect = 1e-36 Identities = 96/101 (95%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 27690 CGCAAGGGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTT 27631 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107 |||||||| ||||||||||||||||||||| | |||||||| Sbjct 27630 TAATTCGATGCAACGCGAAGAACCTTACCAGAACTTGACAT 27590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503998405760