Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq89 298 9e-79 seq88 298 9e-79 >seq89 Length=1719426 Score = 298 bits (330), Expect = 9e-79 Identities = 215/247 (87%), Gaps = 7/247 (3%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1246394 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 1246453 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACC----AACCATA 131 | ||||||||||||| | ||||||||||||||||||||| | ||| || | | | Sbjct 1246454 ACACTTCCATTGGCTAGTCGCCAATAGTCCCTCTAAGAAGTCCGCCGCCTGGGGAGCCCA 1246513 Query 132 GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 | | | | ||| |||||||| | ||||||||||||||| |||||| |||| ||||| Sbjct 1246514 GGC---GTGACTAGTTAGCAGGCTGAGGTCTCGTTCGTTACCGGAATCAACCTGACAAGG 1246570 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1246571 CAACCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCA 1246630 Query 252 ATCTGTC 258 ||||||| Sbjct 1246631 ATCTGTC 1246637 Score = 298 bits (330), Expect = 9e-79 Identities = 215/247 (87%), Gaps = 7/247 (3%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1292420 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 1292361 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACC----AACCATA 131 | ||||||||||||| | ||||||||||||||||||||| | ||| || | | | Sbjct 1292360 ACACTTCCATTGGCTAGTCGCCAATAGTCCCTCTAAGAAGTCCGCCGCCTGGGGAGCCCA 1292301 Query 132 GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 | | | | ||| |||||||| | ||||||||||||||| |||||| |||| ||||| Sbjct 1292300 GGC---GTGACTAGTTAGCAGGCTGAGGTCTCGTTCGTTACCGGAATCAACCTGACAAGG 1292244 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1292243 CAACCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCA 1292184 Query 252 ATCTGTC 258 ||||||| Sbjct 1292183 ATCTGTC 1292177 >seq88 Length=702383 Score = 298 bits (330), Expect = 9e-79 Identities = 215/247 (87%), Gaps = 7/247 (3%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 587345 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 587286 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACC----AACCATA 131 | ||||||||||||| | ||||||||||||||||||||| | ||| || | | | Sbjct 587285 ACACTTCCATTGGCTAGTCGCCAATAGTCCCTCTAAGAAGTCCGCCGCCTGGGGAGCCCA 587226 Query 132 GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 | | | | ||| |||||||| | ||||||||||||||| |||||| |||| ||||| Sbjct 587225 GGC---GTGACTAGTTAGCAGGCTGAGGTCTCGTTCGTTACCGGAATCAACCTGACAAGG 587169 Query 192 CACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCA 251 || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 587168 CAACCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCA 587109 Query 252 ATCTGTC 258 ||||||| Sbjct 587108 ATCTGTC 587102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796799181786