Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq92 351 2e-94 seq89 351 2e-94 seq88 351 2e-94 >seq92 Length=1443051 Score = 351 bits (388), Expect = 2e-94 Identities = 255/294 (87%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGT-CATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | || ||| || ||||||||||||||||||||||||| Sbjct 131740 TACTGAGCCGGATTACTATGGCGGGATCGGCGCAACAGTAGGGTAAAACTAACCTGTCTC 131799 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| | ||||||||||||| |||||| | Sbjct 131800 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGCGGGTGAACAATCCGACGCTTGGAG 131859 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 || ||||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 131860 TATGCTGCTACTCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 131919 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 131920 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCT 131979 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||| | || | ||||||||||||||||||| |||||| |||||||||| Sbjct 131980 GCAAGTCCCGCAGATCTAAAGGATCGATAGGCCATGCTTTCACAGTTTGTATTC 132033 >seq89 Length=1719426 Score = 351 bits (388), Expect = 2e-94 Identities = 255/294 (87%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGT-CATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | || ||| || ||||||||||||||||||||||||| Sbjct 1242328 TACTGAGCCGGATTACTATGGCGGGATCGGCGCAACAGTAGGGTAAAACTAACCTGTCTC 1242387 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| | ||||||||||||| |||||| | Sbjct 1242388 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGCGGGTGAACAATCCGACGCTTGGAG 1242447 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 || ||||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1242448 TATGCTGCTACTCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 1242507 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1242508 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCT 1242567 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||| | || | ||||||||||||||||||| |||||| |||||||||| Sbjct 1242568 GCAAGTCCCGCAGATCTAAAGGATCGATAGGCCATGCTTTCACAGTTTGTATTC 1242621 Score = 351 bits (388), Expect = 2e-94 Identities = 255/294 (87%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGT-CATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | || ||| || ||||||||||||||||||||||||| Sbjct 1296486 TACTGAGCCGGATTACTATGGCGGGATCGGCGCAACAGTAGGGTAAAACTAACCTGTCTC 1296427 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| | ||||||||||||| |||||| | Sbjct 1296426 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGCGGGTGAACAATCCGACGCTTGGAG 1296367 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 || ||||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1296366 TATGCTGCTACTCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 1296307 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1296306 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCT 1296247 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||| | || | ||||||||||||||||||| |||||| |||||||||| Sbjct 1296246 GCAAGTCCCGCAGATCTAAAGGATCGATAGGCCATGCTTTCACAGTTTGTATTC 1296193 >seq88 Length=702383 Score = 351 bits (388), Expect = 2e-94 Identities = 255/294 (87%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGT-CATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| || | || ||| || ||||||||||||||||||||||||| Sbjct 591411 TACTGAGCCGGATTACTATGGCGGGATCGGCGCAACAGTAGGGTAAAACTAACCTGTCTC 591352 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| | ||||||||||||| |||||| | Sbjct 591351 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGCGGGTGAACAATCCGACGCTTGGAG 591292 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 || ||||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 591291 TATGCTGCTACTCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 591232 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 591231 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCT 591172 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||| | || | ||||||||||||||||||| |||||| |||||||||| Sbjct 591171 GCAAGTCCCGCAGATCTAAAGGATCGATAGGCCATGCTTTCACAGTTTGTATTC 591118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854399094336