Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01-
02] 106 sequences; 48,546,496 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq18 217 3e-54
seq15 138 2e-30
>seq18
Length=145863
Score = 217 bits (240), Expect = 3e-54
Identities = 183/225 (81%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 114 aCAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCC 173
||||| |||| |||||||||||||||||||||| ||||| ||| |||||||||| |
Sbjct 35337 ACAGTTTCAGGTGGGCAGTTTGACTGGGGCGGTCACCTCCTAAAAGGTAACGGAGGTGTG 35278
Query 174 CAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTT 233
||||| | ||||||| |||| ||||| || || | |||| ||||||| ||||| | ||
Sbjct 35277 CAAAGGTTCCCTCAGGCTGGACGGAAATCAGCCGTAGAGTGTAAAGGCATAAGGGAGCTT 35218
Query 234 GACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCT 293
|||||| | ||| |||||| ||||||| |||||| ||| |||| ||||||| ||||||
Sbjct 35217 GACTGCAAGACCTACAAGTCGAGCAGGGGCGAAAGCCGGCCTTAGTGATCCGACGGTGCC 35158
Query 294 GAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGAT 338
| ||||| ||||||||||| ||||||||||| ||| || |||||
Sbjct 35157 GCGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGAT 35113
>seq15
Length=69663
Score = 138 bits (152), Expect = 2e-30
Identities = 162/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 121 CAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGAT 180
|| || |||||||| | ||||||| | || | | ||||||||||| | |||| | ||| |
Sbjct 45908 CAATCAGGCAGTTTCATTGGGGCGATGGCTTTCTAAAGAGTAACGAAAGCGCGCGAAGGT 45967
Query 181 ACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCG 240
| |||| ||| ||||| || | | || |||| || | ||| || | ||||
Sbjct 45968 AGGCTCAAGCTGGTCGGAAATCAGCTGTAGAGCGCAATGGTATAAGCCTGCCTAACTGTA 46027
Query 241 ACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGA 300
| ||| |||||| |||||||||||||||||| | || ||| |||| || |||| ||||
Sbjct 46028 AGACCTACAAGTCGAGCAGGGACGAAAGTCGGCCATAGTGACCCGGGGGCACTGAGTGGA 46087
Query 301 ACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
| |||| |||||| |||||| |||| ||| || ||||||
Sbjct 46088 ATGGCCCTCGCTCAACGGATCAAAGGTACGCTAGGGATA 46126
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 982398958656
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |