Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq18 96.9 4e-18 seq15 95.1 1e-17 >seq18 Length=145863 Score = 96.9 bits (106), Expect = 4e-18 Identities = 92/119 (77%), Gaps = 2/119 (2%) Strand=Plus/Plus Query 54 GCATCTTCACCGATACTACAATTTCACTGAGCTCACGGT-TGAGACAGNNNNNNNNNNNN 112 |||||||||| || | | ||||||| ||| || | | |||||||| Sbjct 35527 GCATCTTCACGGACATGTCTATTTCACCGAG-TCTCTCTCTGAGACAGTGCCCAGATCGT 35585 Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 171 ||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 35586 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 35644 >seq15 Length=69663 Score = 95.1 bits (104), Expect = 1e-17 Identities = 97/128 (76%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 45 GGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTG-AGACAGNNN 103 ||| | || |||||| ||| || | | ||||||||||||| || |||| |||||| Sbjct 45702 GGGAACTCCGCATCTGCACGGAGATTTCAATTTCACTGAG-TCTGTGTTGGAGACAGCGG 45644 Query 104 NNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTT 163 || |||||| ||| |||| ||||||||| ||||||||||||||||||||| Sbjct 45643 GGCAGTCGTGACGCCATTCATGCGGGTCAGAACTTACCTGACAAGGAATTTCGCTACCTT 45584 Query 164 AGGACCGT 171 |||||||| Sbjct 45583 AGGACCGT 45576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547199438094