Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq18 223 7e-56 seq15 215 1e-53 >seq18 Length=145863 Score = 223 bits (246), Expect = 7e-56 Identities = 252/334 (75%), Gaps = 13/334 (4%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| || | || |||| | | |||||||||||| || ||||||||||||||| Sbjct 28132 TTTACAACCCACGGGCCGTCTTCCTC-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCA 28189 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || ||||| |||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 28190 TTGCGGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 28249 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||||| |||||||||||||| ||| |||| | |||| ||| ||||||||| ||| Sbjct 28250 GTGGCTGATTGTCCTCTCAGACCAGCTACTGATCATTGCCTCGGTAGGCCATTACCCCAC 28309 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 ||||||||||||| ||| | |||||| | | |||| | | || | ||| Sbjct 28310 CAACTAGCTAATCAGACGCAAGCTCAT-------CCCTAGGCGGTATGAAACCAT--TTT 28360 Query 242 CTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGG 301 || || | |||| ||||||| | |||||||| | |||||| | | || Sbjct 28361 ACTCCTCAG--CATATGAGGTATTAACAACCGTTTCCAGTTGGTATCCCTCTCCTAGGGG 28418 Query 302 CAGATTCCTAGGCATTACTCACCCGTCCGCCGCT 335 ||||||| || || ||||||||||||||||| || Sbjct 28419 CAGATTCTTACGCGTTACTCACCCGTCCGCCACT 28452 >seq15 Length=69663 Score = 215 bits (238), Expect = 1e-53 Identities = 167/195 (86%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 ||||||| | | |||||||||| |||||||||||||||||||||||||||||| ||||| Sbjct 48973 CCTTCTTCCCC-CACGCGGCAT-GGCTGGATCAGGCTTTCGCCCATTGTCCAAGATTCCT 48916 Query 77 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136 |||||||||| |||| ||| |||||| |||||||||||| |||||||| | | |||||| Sbjct 48915 CACTGCTGCCGCCCGAAGGCGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGGCCATCCT 48856 Query 137 CTCAGACCAGTTACGGATCGTCGCCTTGGTG-AGCCATTACCTCACCAACTAGCTAATCC 195 || ||||| | || ||||| | | ||||||| |||| ||||||||||||||| ||||||| Sbjct 48855 CTAAGACCGGCTAAGGATCTTTGGCTTGGTGTAGCCTTTACCTCACCAACTACCTAATCC 48796 Query 196 GACCTAGGCTCATCT 210 || || |||||||| Sbjct 48795 TACGTAAGCTCATCT 48781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071998863680