Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq18 260 5e-67 seq15 163 1e-37 seq89 75.2 4e-11 seq88 75.2 4e-11 >seq18 Length=145863 Score = 260 bits (288), Expect = 5e-67 Identities = 343/468 (73%), Gaps = 17/468 (4%) Strand=Plus/Plus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 |||||| ||| || |||||||||||||||||||||| | | |||| ||||||| ||||| Sbjct 36818 CGCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCCGAGTTCGATTGGCATTTCA 36877 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 |||||| ||||| ||||||| | |||||||| | ||||||||| | ||||| || Sbjct 36878 CCCCTAACCACAACTCATCCCACGATTTTTCAACATCGATGGGTTCGGACTTCCACTTGG 36937 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGC 315 | |||||| |||||| |||| |||||| |||||||| | |||||||| | | Sbjct 36938 TGTTACCCAAGCTTCATCCTGGCCATGGTTAGATCACCCGGGTTCGGGTCCATAAGAAGT 36997 Query 316 CACTCATA--CGCCCTATTCGGACTCGCTTTCGCTACGGCTAC-CCCACACGGGTTAACC 372 ||| || ||||| || |||| ||||||||| |||| | | | |||||| Sbjct 36998 GACTTGTAATTGCCCTGTTAAGACTTGCTTTCGCTTTGGCTCCGGGAAGATCCCTTAACC 37057 Query 373 TCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACC 432 | || || | | || |||| |||||||||||| | |||||||| |||| || | Sbjct 37058 TTGCCACTC-CCTATAAGTCGCCGGCTCATTCTTCCACAGGCACGCGGTCA---GG--GC 37111 Query 433 TAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCC 492 || | || | |||| || | |||| | | ||||||| ||||||||||||||| Sbjct 37112 TAGA--GCCC-----CTCCCACTGCTTGTCAGATTACGGTTTCATGTACTATTTCACTCC 37164 Query 493 CCGCCAGGGGTACT-TTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGG 551 || ||||||| || ||||||||||||||| |||||||| | | |||||||||| ||| Sbjct 37165 CCTTCAGGGGTTCTCTTTCACCTTTCCCTCGCGGTACTTCTTCACTATCGGTCATTCAGG 37224 Query 552 AGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||| |||| |||||||| |||||||||| ||||| Sbjct 37225 AGTATTTAGCCTTACGAGGTGGTCCTCGTTGATTCACACGGGGTTTCA 37272 >seq15 Length=69663 Score = 163 bits (180), Expect = 1e-37 Identities = 193/259 (75%), Gaps = 7/259 (3%) Strand=Plus/Minus Query 53 GGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCC-CCCTAGACCATCCAGTGCT 111 || ||||||||||| ||| | |||||| | |||||| |||| ||||| |||||| Sbjct 44421 GGTATTCGGAGTTTCCTTGGAATTGGTAAGGCTTTGGGCCACCCTTTCCCATCGAGTGCT 44362 Query 112 CTACCTCC---GGGAAGAAACACGCG---ACGCTGCACCTAAATGCATTTCGGGGAGAAC 165 ||||| || | |||| || | ||||| |||||||||| |||||| |||||| Sbjct 44361 CTACCCCCCTTGCCAAGACTTACTCTTTTACGCTCCACCTAAATGGATTTCGCAGAGAAC 44302 Query 166 CAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTT 225 |||||||| | ||| ||||||| ||||||||||| |||||||||||||| || || Sbjct 44301 CAGCTATCTCCGGGTTCGATTGGCTTTTCACCCCTAGCCACAGGTCATCCCTGCATATTG 44242 Query 226 CAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGAT 285 | || | ||||||||| |||||| || ||||| ||||| ||||||||||| | Sbjct 44241 CCACAGACATGGGTTCGGCCCTCCAGAAAGTGTTACCTTTTCTTCAGCCTGCCCATGGCT 44182 Query 286 AGATCACTTCGCTTCGGGT 304 ||||||| | ||||||| Sbjct 44181 AGATCACCCGGTTTCGGGT 44163 Score = 96.9 bits (106), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 5/146 (3%) Strand=Plus/Minus Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACT- 506 || |||| | ||| | || | | |||||| || ||||||||||| | |||||||| Sbjct 43774 CTTCGACTGTTTGCAAGCCAAGGATTTCAGTATCTCTTTCACTCCCCTCATGGGGTACTG 43715 Query 507 TTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAG--GAGTATTTAGGCTT 564 |||| |||||||||||||||||| || | |||||||||| ||| | ||| |||||||| Sbjct 43714 TTTCTCCTTTCCCTCACGGTACTAGTTCACTATCGGTCA--AAGCAGGGTACTTAGGCTT 43657 Query 565 AACGGGTGGTCCCGCCAGATTCACAC 590 ||||||| || ||| | ||| || Sbjct 43656 GGAGGGTGGTACCCCCATAATCAAAC 43631 >seq89 Length=1719426 Score = 75.2 bits (82), Expect = 4e-11 Identities = 55/64 (86%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGG 561 || ||||||| |||||||||||||||||||| ||||||||||| || ||||||||| Sbjct 1244949 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCCCGTCAGTATTTAGC 1245008 Query 562 CTTA 565 |||| Sbjct 1245009 CTTA 1245012 Score = 75.2 bits (82), Expect = 4e-11 Identities = 55/64 (86%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGG 561 || ||||||| |||||||||||||||||||| ||||||||||| || ||||||||| Sbjct 1293865 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCCCGTCAGTATTTAGC 1293806 Query 562 CTTA 565 |||| Sbjct 1293805 CTTA 1293802 >seq88 Length=702383 Score = 75.2 bits (82), Expect = 4e-11 Identities = 55/64 (86%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 502 GTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGG 561 || ||||||| |||||||||||||||||||| ||||||||||| || ||||||||| Sbjct 588790 GTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCCCGTCAGTATTTAGC 588731 Query 562 CTTA 565 |||| Sbjct 588730 CTTA 588727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817598073344