Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq18 188 2e-45 seq15 159 9e-37 >seq18 Length=145863 Score = 188 bits (208), Expect = 2e-45 Identities = 305/419 (73%), Gaps = 20/419 (5%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| || | | ||||||||| | ||||||| | |||| || || ||| Sbjct 36885 CCACAACTCATCCCACGA--TTTTTCAACATCGATGGGTTCGGACTTCCACTTGGT-GTT 36941 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| |||| || |||||| ||||| || |||||| || || Sbjct 36942 ACCCAAGCTT-CATCCTGGCCAT-GGTTAGATCACCCGGGTT-CGGGTCCATAAGA-AGT 36997 Query 129 GACTAGAC---GCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTAT--TCGGTTAAG 183 |||| | ||||| ||||||| ||||| |||| | |||| | || |||| Sbjct 36998 GACTTGTAATTGCCCTGTTAAGACTTGCTTT-CGCTTTGGCTCCGGGAAGATCCCTTAAC 37056 Query 184 CTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAA 243 ||| |||||| ||||||||| | | |||| | | | ||| |||| |||| | Sbjct 37057 CTT-GCCACTCCCTATAAGTCGCCGGCTCATTCTTCCACAGGCACGCGGTCAGGGCT-AG 37114 Query 244 AGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 || |||||||||||||| | |||||||||| | ||||||||||||||| || || Sbjct 37115 AGCCC-CTCCCACTGCTTGTCAGATTACGGTTTCATGTACTATTTCACTCCCCT-TCAGG 37172 Query 304 GGTTCT-TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTA 362 |||||| |||| |||||||||| ||||||| |||||||||||||| |||| |||||||| Sbjct 37173 GGTTCTCTTTCACCTTTCCCTCGCGGTACTTCTTCACTATCGGTCATTCAGGAGTATTTA 37232 Query 363 GCCTT-GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||||| |||| |||||| | ||||| || ||||| |||| || | ||||||| Sbjct 37233 GCCTTACGAGG-TGGTCCTCGTTGATTCACACGGGGTTTCACGTGTCCCATGCTACTCG 37290 >seq15 Length=69663 Score = 159 bits (176), Expect = 9e-37 Identities = 199/264 (75%), Gaps = 23/264 (9%) Strand=Plus/Minus Query 145 AAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTT-----AAGCTTTGCCACTGAAAA 198 |||||||||| || ||| |||| | ||||| ||||| ||||| ||| | | Sbjct 43884 AAGACTCGCTCTT-GCTGTGCCTACACCTAT-CGGTTTAAGCAAGCTGTGC-----AGAT 43832 Query 199 TAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACA------AAGTGGGCTC 252 | | ||||||||||||||| |||||||||||| | || ||| | | || | || Sbjct 43831 TTACTCGCTGACCCATTATGCAAAAGGTACGCCGGCATCCACCTTTATATAGGTAGACTT 43772 Query 253 CCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT-TT 311 | |||| ||| | || | | |||||| |||| ||||||||||||| ||||| || || Sbjct 43771 CGACTGTTTGCAAGCCAAGGATTTCAGTATCTCTTTCACTCCCCTCAT-GGGGTACTGTT 43713 Query 312 TCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTC-AGTCAGTAGTATTTAGCCTTGGA 370 || ||||||||||||||||||||||||||||||||| | ||| ||| |||| |||||| Sbjct 43712 TCTCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAAAGCAG-GGTACTTAGGCTTGGA 43654 Query 371 GGATGGTCCCCCCATATTCAGACA 394 || |||| |||||||| ||| ||| Sbjct 43653 GGGTGGTACCCCCATAATCAAACA 43630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241598683904