Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq18 194 3e-47 seq15 167 5e-39 >seq18 Length=145863 Score = 194 bits (214), Expect = 3e-47 Identities = 228/305 (75%), Gaps = 14/305 (5%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || || |||||||||||||||||| Sbjct 28163 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCTCACTGCTGCCTCCCGTAG 28222 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | | |||||||| || ||||| ||| Sbjct 28223 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATTGTCCTCTCAGACCAGCTACTGAT 28282 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | | | || ||| ||| |||| | ||||||||| |||||| | ||| ||| |||| | Sbjct 28283 CATTGCCTCGGTAGGCCATTACCCCACCAACTAGCTAATCAGACGCAAGCTCATCCCTAG 28342 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 ||| || | ||| || | | ||||| | || |||| ||||||| | | Sbjct 28343 GCGGTA---------TGAAACCATTTTAC--TCCTCAG-CA-TATGAGGTATTAACAACC 28389 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 ||||||| | ||| || ||| | ||||| || || ||| ||||||||||||||||| Sbjct 28390 GTTTCCAGTTGGTATCCCTCTCCTAGGGGCAGATT-CTTACGCGTTACTCACCCGTCCGC 28448 Query 301 CACTA 305 ||||| Sbjct 28449 CACTA 28453 >seq15 Length=69663 Score = 167 bits (184), Expect = 5e-39 Identities = 144/177 (81%), Gaps = 1/177 (1%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | |||| |||||| |||| |||||||| ||| || || |||||||||| |||| || Sbjct 48957 GGCATGGCTGGATCAGGCTTTCGCCCATTGTCCAAGATTCCTCACTGCTGCCGCCCGAAG 48898 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 | ||||||||||||||||||||||| |||||||| || ||||| || ||||||| ||| Sbjct 48897 GCGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGGCCATCCTCTAAGACCGGCTAAGGAT 48838 Query 121 CGTCGGCTTGGTG-GGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCT 176 | | ||||||||| || ||| |||||||||||||||||| || ||| ||||| Sbjct 48837 CTTTGGCTTGGTGTAGCCTTTACCTCACCAACTACCTAATCCTACGTAAGCTCATCT 48781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998398941696