Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq18 176 1e-41 seq15 143 6e-32 >seq18 Length=145863 Score = 176 bits (194), Expect = 1e-41 Identities = 158/193 (82%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||||||||||| || |||| | |||| || ||| |||||||| | | || |||| Sbjct 36490 CCACAGCTTCGGCAGACCGCTTA-GTCCCG-TAAATTTTCGGCGCGAGAACGCTCCACCA 36547 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTA 326 ||||||||||||||||||||| |||| |||||||||| |||| ||||| |||| ||| | Sbjct 36548 GTGAGCTATTACGCACTCTTTAAAGGGTGGCTGCTTCTAAGCAAACCTTCTGGCTGTTTC 36607 Query 327 CGCAACTC-CACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGG 385 || |||| ||| |||||| ||||| || | || || ||||||||||||| |||||||| Sbjct 36608 TGC-ACTCTCACCTCCTTTTCCACTTAGCGATCATTTTGGGGCCTTAGCTGGTGATCTGG 36666 Query 386 GCTGTTTCCCTCT 398 ||||||||||||| Sbjct 36667 GCTGTTTCCCTCT 36679 >seq15 Length=69663 Score = 143 bits (158), Expect = 6e-32 Identities = 146/189 (77%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAG 271 ||||||| || |||| ||| || |||||| | ||||| | || |||||||||| Sbjct 44655 GCTTCGGTGGGCGGCTTA-GCCTCGTTACATTTTTGGCGCCCCTTGGCTAGACCAGTGAG 44597 Query 272 CTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAA 331 || |||||| ||||| |||| |||||||||||||||| |||| |||||||||| || Sbjct 44596 CTGTTACGCTTTCTTTAAAGGGTGGCTGCTTCCAAGCCCACCTACTGGTTGTCTCTGCCT 44537 Query 332 CTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTT 391 |||||||||||||||| | |||| ||| | | ||||||| | | |||||||| || Sbjct 44536 AGGCACATCCTTTCCCACTTGGCCACCTCTTTGAGACCTTAGCGAACGGTCTGGGCTTTT 44477 Query 392 TCCCTCTCG 400 ||||||||| Sbjct 44476 TCCCTCTCG 44468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177598751744