Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq18 201 2e-49 seq15 118 2e-24 >seq18 Length=145863 Score = 201 bits (222), Expect = 2e-49 Identities = 214/280 (76%), Gaps = 2/280 (1%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| |||| |||| | | | ||||||| ||||||||| ||||||||||| Sbjct 27817 GCTTTCGTCTGTCAGTGTCAATAGCGGCCCAGCAAGGTGCCTTCGCCTTTGGTGTTCCTC 27876 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | ||||||| ||||||||||||||||| |||||||| ||||| || | | | || || Sbjct 27877 CCAATATCTATGCATTTCACCGCTACACTGGGAATTCCCCTTGCCCCTACCGTATTCTAG 27936 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 ||||||| | ||| | ||||| ||||| || ||||||| |||| | Sbjct 27937 CCTGCCAGTTTCCACCGCATTGTCAGGGTTAAGCCCTGAGCTTTCACAGTAGACTAAACA 27996 Query 186 TCCCGCCTACACG-CCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATT 244 || ||| || | |||||||| |||||| |||||||||||||||||| ||| |||||| Sbjct 27997 GGCCACCT-CAGGACCCTTTACGCCCAATGAATCCGGATAACGCTTGCATCCTCCGTATT 28055 Query 245 ACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCT 284 |||||||||||||||||| ||||||||| |||||||||| Sbjct 28056 ACCGCGGCTGCTGGCACGGAGTTAGCCGATGCTTATTCCT 28095 >seq15 Length=69663 Score = 118 bits (130), Expect = 2e-24 Identities = 85/97 (88%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 ||||||||| ||||||||| |||| ||| ||||||||||||| ||| || ||||||||| Sbjct 49120 CCGCCTACATGCCCTTTACGCCCAGTAATTCCGGATAACGCTCGCCCCCCCCGTATTACC 49061 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCT 284 ||||||||||||||| ||||||||| | ||| ||||| Sbjct 49060 GCGGCTGCTGGCACGGAGTTAGCCGGGACTT-TTCCT 49025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828799148926