Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq18 98.7 7e-19 seq15 93.3 3e-17 >seq18 Length=145863 Score = 98.7 bits (108), Expect = 7e-19 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||| |||||||||| | || |||||||||| | || | Sbjct 35123 TAACTTTTATCCGTTGAGCGACGGCCCTTCCACGCGGCACCGTCGGATCACTAAGGCCGG 35182 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 ||||||| |||||| | |||| | ||| ||| |||||| | ||| |||| || |||| | Sbjct 35183 CTTTCGCCCCTGCTCGACTTGTAGGTCTTGCAGTCAAGCTCCCTTATGCCTTTACACTCT 35242 Query 121 CACTAC-GATTTCCGACC 137 || | |||||||| || Sbjct 35243 -ACGGCTGATTTCCGTCC 35259 >seq15 Length=69663 Score = 93.3 bits (102), Expect = 3e-17 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||| ||||||||||||| |||| ||||| ||| ||| |||| |||||||| || Sbjct 46115 TACCTTTGATCCGTTGAGCGAGGGCCATTCCACTCAGTGCCCCCGGGTCACTATGGCCGA 46056 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| |||||| | |||| | ||| || | | ||| ||| | ||||||| || | Sbjct 46055 CTTTCGTCCCTGCTCGACTTGTAGGTCTTACAGTTAGGCAGGCTTATACCATTGCGCTCT 45996 Query 121 CACTAC-GATTTCCGACC 137 || | ||||||||||| Sbjct 45995 -ACAGCTGATTTCCGACC 45979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351999650200