Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq92 140 3e-31 seq89 140 3e-31 seq88 140 3e-31 >seq92 Length=1443051 Score = 140 bits (154), Expect = 3e-31 Identities = 140/178 (79%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGC-TCGAATACATTACCATGGA 72 ||||||||| ||||||||| ||||||||||||| | || | |||||| ||| |||||| Sbjct 143575 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAGGCATCCGCCTTGAATACGTTAGCATGGA 143516 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | ||||||| | | |||| |||| ||| | | |||||| |||||||| | Sbjct 143515 ATAACACGATAGGACT--CTGGCCTATCTTGTTGGTCTGTGGGACCGGA-GTAATGATTA 143459 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||| ||||||||| | ||||| ||||||| ||||||||||||||||||||| Sbjct 143458 AGAGGGACAGTCGGGGGCATTCGTATTTCATTGTCAGAGGTGAAATTCTTGGATTTAT 143401 >seq89 Length=1719426 Score = 140 bits (154), Expect = 3e-31 Identities = 140/178 (79%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGC-TCGAATACATTACCATGGA 72 ||||||||| ||||||||| ||||||||||||| | || | |||||| ||| |||||| Sbjct 1247124 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAGGCATCCGCCTTGAATACGTTAGCATGGA 1247065 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | ||||||| | | |||| |||| ||| | | |||||| |||||||| | Sbjct 1247064 ATAACACGATAGGACT--CTGGCCTATCTTGTTGGTCTGTGGGACCGGA-GTAATGATTA 1247008 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||| ||||||||| | ||||| ||||||| ||||||||||||||||||||| Sbjct 1247007 AGAGGGACAGTCGGGGGCATTCGTATTTCATTGTCAGAGGTGAAATTCTTGGATTTAT 1246950 Score = 140 bits (154), Expect = 3e-31 Identities = 140/178 (79%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGC-TCGAATACATTACCATGGA 72 ||||||||| ||||||||| ||||||||||||| | || | |||||| ||| |||||| Sbjct 1291690 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAGGCATCCGCCTTGAATACGTTAGCATGGA 1291749 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | ||||||| | | |||| |||| ||| | | |||||| |||||||| | Sbjct 1291750 ATAACACGATAGGACT--CTGGCCTATCTTGTTGGTCTGTGGGACCGGA-GTAATGATTA 1291806 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||| ||||||||| | ||||| ||||||| ||||||||||||||||||||| Sbjct 1291807 AGAGGGACAGTCGGGGGCATTCGTATTTCATTGTCAGAGGTGAAATTCTTGGATTTAT 1291864 >seq88 Length=702383 Score = 140 bits (154), Expect = 3e-31 Identities = 140/178 (79%), Gaps = 4/178 (2%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGC-TCGAATACATTACCATGGA 72 ||||||||| ||||||||| ||||||||||||| | || | |||||| ||| |||||| Sbjct 586615 TTACTTTGAGTAAATTAGAGTGTTCAAAGCAGGCATCCGCCTTGAATACGTTAGCATGGA 586674 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAA 132 |||| | ||||||| | | |||| |||| ||| | | |||||| |||||||| | Sbjct 586675 ATAACACGATAGGACT--CTGGCCTATCTTGTTGGTCTGTGGGACCGGA-GTAATGATTA 586731 Query 133 ATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTAT 190 | | ||| ||||||||| | ||||| ||||||| ||||||||||||||||||||| Sbjct 586732 AGAGGGACAGTCGGGGGCATTCGTATTTCATTGTCAGAGGTGAAATTCTTGGATTTAT 586789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511999474240