Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq18 275 1e-71 seq15 129 9e-28 >seq18 Length=145863 Score = 275 bits (304), Expect = 1e-71 Identities = 226/274 (82%), Gaps = 1/274 (0%) Strand=Plus/Plus Query 3 AGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC 62 ||| ||||||| ||||||||| |||||| |||||| ||| || ||||| |||||| Sbjct 31063 AGGTGGGCTTCCTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACATAGCTACCCAGC 31122 Query 63 -TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | | | |||||||| | ||||||| |||||||||| |||| ||| ||||||||||||| Sbjct 31123 GTGTCCCCTTGGCAGGAGAACTGGTACACCAGAGGTGCGTCCTTCCAGGTCCTCTCGTAC 31182 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || ||| |||||| |||| || ||||| || |||||| ||||||||||||||| | Sbjct 31183 TATGGAAGGCTCCTTTCAATGCTCTAACGCCTACACCGGATATGGACCGAACTGTCTCAC 31242 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 ||||||||||||||||||| ||| || |||| ||||||||||||||||||||||||||| Sbjct 31243 GACGTTCTGAACCCAGCTCACGTACCGCTTTCATGGGCGAACAGCCCAACCCTTGGGACG 31302 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||| | |||||||| || || |||||||||||| Sbjct 31303 TACTACCGCCCCAGGTTGCGATGAGCCGACATCG 31336 Score = 275 bits (304), Expect = 1e-71 Identities = 226/274 (82%), Gaps = 1/274 (0%) Strand=Plus/Plus Query 3 AGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC 62 ||| ||||||| ||||||||| |||||| |||||| ||| || ||||| |||||| Sbjct 33603 AGGTGGGCTTCCTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACATAGCTACCCAGC 33662 Query 63 -TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTAC 121 | | | |||||||| | ||||||| |||||||||| |||| ||| ||||||||||||| Sbjct 33663 GTGTCCCCTTGGCAGGAGAACTGGTACACCAGAGGTGCGTCCTTCCAGGTCCTCTCGTAC 33722 Query 122 TAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGC 181 || ||| |||||| |||| || ||||| || |||||| ||||||||||||||| | Sbjct 33723 TATGGAAGGCTCCTTTCAATGCTCTAACGCCTACACCGGATATGGACCGAACTGTCTCAC 33782 Query 182 GACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACC 241 ||||||||||||||||||| ||| || |||| ||||||||||||||||||||||||||| Sbjct 33783 GACGTTCTGAACCCAGCTCACGTACCGCTTTCATGGGCGAACAGCCCAACCCTTGGGACG 33842 Query 242 TACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||| | |||||||| || || |||||||||||| Sbjct 33843 TACTACCGCCCCAGGTTGCGATGAGCCGACATCG 33876 >seq15 Length=69663 Score = 129 bits (142), Expect = 9e-28 Identities = 98/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 160 GATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGC 219 |||||| |||| |||| ||| || || || |||||| ||| ||| || ||||||| ||| Sbjct 46292 GATAGGAACCGTACTGCCTCTCGGCGCACTAAACCCAACTCACGTACCGCTTTAATCGGC 46233 Query 220 GAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||||||| |||||||||||||| |||||||||||||||| || ||| |||||||| Sbjct 46232 GAACAGCCGAACCCTTGGGACCTTCTTCAGCCCCAGGATGCGATGAGTCGACATCG 46177 Score = 109 bits (120), Expect = 9e-22 Identities = 115/149 (77%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 8 GGCTTCGGGCTT-AGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATG 66 |||||| |||| | | || | |||| |||||| ||| |||| ||||| |||||| ||| Sbjct 46535 GGCTTCCTGCTTGATAGGCTTCCAGCAGTTATCCGTTCTAAACGTAGCTACCCAGCGATG 46476 Query 67 CACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGG 126 | |||||||| |||||||| ||||||||||| | ||||||||||||||||| |||| Sbjct 46475 CCCTTGGCAGGACAACTGGCAGACCAGAGGTTTACCATTCCCGGTCCTCTCGTACAAAGG 46416 Query 127 ACAGCTCCTCTCAAATTTCCTACGCCCAC 155 | | ||||| |||| ||| ||||| Sbjct 46415 AATGACTCTCTC-AATTCTTTACCCCCAC 46388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780799198216