Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq18 284 3e-74 seq15 194 4e-47 >seq18 Length=145863 Score = 284 bits (314), Expect = 3e-74 Identities = 313/411 (76%), Gaps = 17/411 (4%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 |||||||||| |||| ||||| | |||||||||| ||| | |||||||| |||||||| Sbjct 28132 TTTACAACCCACGGGCCGTCTTCCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 28191 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || ||||| |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 28192 GCGGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 28251 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| | ||||||||||||||||| |||| | |||| ||| |||||||||||| ||| Sbjct 28252 GGCTGATTGTCCTCTCAGACCAGCTACTGATCATTGCCTCGGTAGGCCATTACCCCACCA 28311 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGG 244 ||||||||||| | | |||||| ||| | || ||| || ||| Sbjct 28312 ACTAGCTAATCAGACGCAAGCTCATCC-CTAG---GCGGTATGAA-----ACCATTTTAC 28362 Query 245 TCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCA 304 || | | |||| ||||||| | |||||||||||| | |||||| |||| |||| Sbjct 28363 TCCT--CAGCATATGAGGTATTAACAACCGTTTCCAGTTGGTATCCCTCTCCTAGGGGCA 28420 Query 305 GTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTG 364 | ||| | | |||||||||||||||||||| | | | ||||| ||| ||| Sbjct 28421 GATTCTTACGCGTTACTCACCCGTCCGCCACTAG--GACCAGTTAGCAA---GCTATCTG 28475 Query 365 TTAC-CGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | | |||||||||||||||||||| || |||||| |||||||| ||||| Sbjct 28476 ATCCTCGTTCGACTTGCATGTGTTAAGCATGCCGCTAGCGTTCATCCTGAG 28526 >seq15 Length=69663 Score = 194 bits (214), Expect = 4e-47 Identities = 151/179 (84%), Gaps = 1/179 (1%) Strand=Plus/Minus Query 19 GCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCC 78 ||||||||| ||||||||||||||| ||||||||| |||||||||| ||| ||||| | Sbjct 48974 GCCTTCTTCCCCCACGCGGCATGGCTGGATCAGGCTTTCGCCCATTGTCCAAGATTCCTC 48915 Query 79 ACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTC 138 ||||||||| |||| ||| |||||| |||||||||||| |||||||||| || ||||||| Sbjct 48914 ACTGCTGCCGCCCGAAGGCGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGGCCATCCTC 48855 Query 139 TCAGACCAGCTAGGGATCGTCGCCTAGGTG-GGCCATTACCCCGCCAACTAGCTAATCC 196 | ||||| |||| ||||| | | || |||| ||| ||||| | ||||||| ||||||| Sbjct 48854 TAAGACCGGCTAAGGATCTTTGGCTTGGTGTAGCCTTTACCTCACCAACTACCTAATCC 48796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222398704256