Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq15 295 2e-77 seq18 291 2e-76 >seq15 Length=69663 Score = 295 bits (326), Expect = 2e-77 Identities = 264/327 (81%), Gaps = 7/327 (2%) Strand=Plus/Plus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTT-ACCAAGGCGACGATCAGTAGCCGACCTGAGA 225 |||||| |||||||| |||||| |||| |||||| | | |||| |||||| || ||| Sbjct 48797 GATTAGGTAGTTGGTGAGGTAAAGGCTACACCAAGCCAAAGATCCTTAGCCGGTCTTAGA 48856 Query 226 GGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGG 285 || || |||||||| ||| |||||||||||| ||| || ||| |||| |||||||||| Sbjct 48857 GGATGGCCGGCCACACTGGGACTGAGACACGGCCCAGACGCCTTCGGGCGGCAGCAGTGA 48916 Query 286 GGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC-- 343 ||||| ||| ||||||||| |||||||||| |||| | |||||||| | || |||||| Sbjct 48917 GGAATCTTGGACAATGGGCGAAAGCCTGATCCAGCCATGCCGCGTGGGGGAAGAAGGCTA 48976 Query 344 -CTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAGGAGGAAGCC 402 || ||||||||| | ||| | |||||| |||| |||| |||||| | ||| | Sbjct 48977 GATT--GGTCGTAAACCCCTGACTTCAAGGCAGATTGTGACACAACTTGAAGGAAAAGTC 49034 Query 403 CCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATT 462 |||||||||| |||||||||||||||||||||||| |||||| |||||||||||||||| Sbjct 49035 CCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGGGGGGGCGAGCGTTATCCGGAATT 49094 Query 463 ACTGGGGCGTAAAGGGTGCGTAGGTGG 489 ||| |||||||||||| ||||| || Sbjct 49095 ACT-GGGCGTAAAGGGCATGTAGGCGG 49120 >seq18 Length=145863 Score = 291 bits (322), Expect = 2e-76 Identities = 272/342 (80%), Gaps = 3/342 (1%) Strand=Plus/Minus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 ||||||||||||||||||||| ||||| ||| |||| |||| | |||||||||| | | Sbjct 28328 GCGTCTGATTAGCTAGTTGGTGGGGTAATGGCCTACCGAGGCAATGATCAGTAGCTGGTC 28269 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||||||| ||| |||||| ||| |||||||||||| ||| |||||||||||||||||| Sbjct 28268 TGAGAGGACAATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGC 28209 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 |||| ||||| || | |||||||| ||||||||| | ||||| |||||||| || || Sbjct 28208 AGTGAGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGAAGAC 28149 Query 341 GGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG-ATAA-TGACGGTACTTGAGGAGGA 398 |||| |||| ||||| || | || |||| |||| |||||||| |||| | Sbjct 28148 GGCCCGTGGGTTGTAAACTCCTTTTCTTGGAGAAGAATAACTGACGGTATCCAAGGAATA 28089 Query 399 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 458 ||| ||||||||| |||||||||||||||||||||||| ||| || |||||||||||| Sbjct 28088 AGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATGCAAGCGTTATCCGG 28029 Query 459 AATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||| | ||||||||||||| | |||||| | || |||| Sbjct 28028 -ATTCATTGGGCGTAAAGGGTCCTGAGGTGGCCTGTTTAGTC 27988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497598412544