Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq18 302 1e-79 seq15 125 2e-26 >seq18 Length=145863 Score = 302 bits (334), Expect = 1e-79 Identities = 309/402 (77%), Gaps = 1/402 (0%) Strand=Plus/Minus Query 7 AGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGT 66 |||| |||| ||||||||| |||||||||||||||||||||||| ||| || ||||| Sbjct 28095 AGGAATAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATGCAAGCGT 28036 Query 67 TATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGG 126 |||||||| | | |||||||||||||| | |||||| | || |||| ||||||| Sbjct 28035 TATCCGGATTCATTGGGCGTAAAGGGTCCTGAGGTGGCCTGTTTAGTCTACTGTGAAAGC 27976 Query 127 CTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAG 186 | |||| ||||| | | ||| | ||||||| ||||||| | | | ||||||||| Sbjct 27975 TCAGGGCTTAACCCTGACAATGCGGTGGAAACTGGCAGGCTAGAATACGGTAGGGGCAAG 27916 Query 187 TGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGG 246 |||||||| |||||||||||||||||| |||||||| |||||||||||| |||||||| Sbjct 27915 GGGAATTCCCAGTGTAGCGGTGAAATGCATAGATATTGGGAGGAACACCAAAGGCGAAGG 27856 Query 247 CGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAG 306 | |||||||| | | | ||||||||| ||||||| |||||| || | ||||||| Sbjct 27855 CACCTTGCTGGGCCGCTATTGACACTGACAGACGAAAGCCAGGGGAGTAACCCGGATTAG 27796 Query 307 ATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGCTC 366 |||||| | || ||| || |||||||||| | |||| |||| | || | | | Sbjct 27795 ATACCCGGCTAATCCTGGCTGTAAACGATGGACACTAAGTGT-TGAACGATTCAAACGTT 27737 Query 367 CGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | |||| ||||| ||||| ||||| | || ||||||||||| Sbjct 27736 CAGTGCTGCAGCTAACGCGTTAAGTGTCCCGCCTGGGGAGTA 27695 >seq15 Length=69663 Score = 125 bits (138), Expect = 2e-26 Identities = 89/102 (87%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 |||||| | ||| ||||||||||| |||||||||||||||||||||||| |||||| Sbjct 49019 ACTTGAAGGAAAAGTCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGGGGGGGCG 49078 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGG 103 ||||||||||||||||||||||||||||||| ||||| || Sbjct 49079 AGCGTTATCCGGAATTACTGGGCGTAAAGGGCATGTAGGCGG 49120 Score = 125 bits (138), Expect = 2e-26 Identities = 125/161 (78%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 177 GAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCA 236 |||||| |||||||||||| | | || |||||||| | ||| | |||||||| || Sbjct 49614 GAGGGG--AGTGGAATTCCTGGAGGAGAGGTGAAATTCACAGAGACCAGGAGGAAGGCCG 49671 Query 237 GTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAA 296 ||||||||| || || | | || ||||| |||||| |||||||||||| | ||| Sbjct 49672 ACGGCGAAGGCATCTCCCTAGCCCTTAGCTGACGCTGAGGTGCGAAAGCGTGGGTATCAA 49731 Query 297 ACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 | ||||||||| ||||| |||||||||||| | |||||||| Sbjct 49732 AGAGGATTAGAGACCCTTGTAGTCCACGCCCTCAACGATGA 49772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203198724608