Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq18 221 4e-55 seq15 165 3e-38 >seq18 Length=145863 Score = 221 bits (244), Expect = 4e-55 Identities = 361/509 (71%), Gaps = 17/509 (3%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAG 94 |||||||| || |||||||| ||||||||||||||||| | |||||||| |||| Sbjct 36987 GACCCGAACCCGGGTGATCTAACCATGGCCAGGATGAAGCTTGGGTAACACCAAGTGGAA 36928 Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTA 154 ||||||||||| |||||||||||| |||||||| ||||| ||||||||||| || | Sbjct 36927 GTCCGAACCCATCGATGTTGAAAAATCGTGGGATGAGTTGTGGTTAGGGGTGAAATGCCA 36868 Query 155 AACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAG--GTAGTGCCTCAAGTAT 212 | | |||| ||| |||||||||||| |||||| || || | || | | | | || Sbjct 36867 ATCGAACTCGGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGCGCAGCGATTGACG-AT 36809 Query 213 CACCATC--GGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGACTTACCAAACCAT 270 | | | |||||| ||||||||| | | | ||| | | | ||||||| | | Sbjct 36808 GAGCTGCCTAGGGGTAAAGCACTGTT-TCGGTGCGGGCTGCGAGAGCGGTACCAAATCGT 36750 Query 271 TGCAAACTCCGAATGC---GCATCAGTTTTACCG--CGGGAGTGAGGGCATGGGTGCTAA 325 ||||||| |||| | |||| || | ||| |||||| |||| | ||| Sbjct 36749 AGCAAACTAAGAATACTAGGCAT--GTCCTTCCGGCAATCAGTGAGACAGTGGGGGATAA 36692 Query 326 GGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTA 385 | ||| | | ||||| || | || || | ||||||||||||| |||||| |||| Sbjct 36691 GCTCCATTGTCAAGAGGGAAACAGCCCAGATCACCAGCTAAGGCCCCAAAATGATCGCTA 36632 Query 386 AGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCAT 445 ||| || || || || || ||| | ||||| || | ||| |||| |||||||||| Sbjct 36631 AGTGGAA--AAGGAGGTGAGAGTGCAGAAACAGCCAGAAGGTTTGCTTAGAAGCAGCCA- 36575 Query 446 TCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGG 505 | |||||||||||||||| |||||||| || ||| || ||| || ||| |||| Sbjct 36574 CCCTTTAAAGAGTGCGTAATAGCTCACTGGTGGAGCGTTCTCGCGCCGAAAATTTACGGG 36515 Query 506 TATTAAGTTGTCTACCGAAGCAGTGGGAT 534 | |||| |||| ||||||| ||||||| Sbjct 36514 -ACTAAGCGGTCTGCCGAAGCTGTGGGAT 36487 >seq15 Length=69663 Score = 165 bits (182), Expect = 3e-38 Identities = 312/456 (68%), Gaps = 20/456 (4%) Strand=Plus/Plus Query 36 ACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGG 95 |||||||||| |||||||| |||||| |||| ||||| |||||||| ||||||| Sbjct 44163 ACCCGAAACCGGGTGATCTAGCCATGGGCAGGCTGAAGAAAAGGTAACACTTTCTGGAGG 44222 Query 96 TCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAA 155 ||||||||| ||| | || || ||||||| |||||| ||||||||||| || || Sbjct 44223 GCCGAACCCATGTCTGTGGCAATATGCAGGGATGACCTGTGGCTAGGGGTGAAAAGCCAA 44282 Query 156 ACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCT-------CAA 208 | ||| ||| |||||||||||||| ||||| | |||||||| | || | || Sbjct 44283 TCGAACCCGGAGATAGCTGGTTCTCTGCGAAATCCATTTAGGTGGAGCGTAAAAGAGTAA 44342 Query 209 GTATCACCATCGGGGGTAGAGCACTGTTATGGCTAGGGGGTCATTGCGACTTACCAAACC 268 || | || |||||||||||||| || |||| | | | |||||||| | Sbjct 44343 GTCTTGGCAAGGGGGGTAGAGCACTCGATGGGAAAGGGTGGCCCAAAGCCTTACCAATTC 44402 Query 269 ATTGCAAACTCCGAATGCGC--ATCA--GTTTTACCGCGGGAGTGAGGGCATGGGTGCTA 324 | ||||||||||| | | ||| |||||| || || ||||||| | Sbjct 44403 CAAGGAAACTCCGAATACCCTTGTCAATCTTTTAC------AGACAGACTCTGGGTGCAA 44456 Query 325 AGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCT 384 |||||| | ||||||| || | || ||| | ||||||| | | || | || Sbjct 44457 AGGTCCAGGGTCGAGAGGGAAAAAGCCCAGACCGTTCGCTAAGGTCTCAAAGAGGTGGCC 44516 Query 385 AAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCA 444 |||| | || || || || ||||| | || | || |||||||||||||||| Sbjct 44517 AAGTGGGA--AAGGATGTGCCTAGGCAGAGACAACCAGTAGGTGGGCTTGGAAGCAGCCA 44574 Query 445 TTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 | |||||||| ||||||||||||||| ||| || Sbjct 44575 -CCCTTTAAAGAAAGCGTAACAGCTCACTGGTCTAG 44609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689598209024