Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq92 706 0.0 seq89 706 0.0 seq88 706 0.0 >seq92 Length=1443051 Score = 706 bits (782), Expect = 0.0 Identities = 485/545 (89%), Gaps = 23/545 (4%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 132067 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 132126 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||| Sbjct 132127 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCACCTGGATC 132186 Query 127 GGC---CCGCGAAGGAC--CTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTC 181 ||| |||||| || | ||| |||||||| || ||| ||| ||||||| Sbjct 132187 GGCGGCCCGCGAGGGGCGCCTTGGAGCCAGAAAGAGG--------GACGAGTCCCGCTTC 132238 Query 182 ------ATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACG 235 || || ||||||||| |||| ||| |||||||||||||||| |||||||| Sbjct 132239 CAAGCCATGGAATAAGTAAAATAACGTTAAAGGTAGTGGTATTTCACCGGCGCCGAA--- 132295 Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 132296 GCTCCCACTTATTCTACACCCCTTAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 132355 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 132356 ACAGGGTCTTCTTTCCCCGCTGTTTCTTCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 132415 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 132416 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 132475 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 132476 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 132535 Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 132536 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAGCATC 132595 Query 536 ACTTT 540 |||| Sbjct 132596 -CTTT 132599 Score = 563 bits (624), Expect = 3e-158 Identities = 354/380 (93%), Gaps = 10/380 (3%) Strand=Plus/Plus Query 167 GACCAGTTCCGCTTC------ATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTC 220 ||| ||| ||||||| || || ||||||||| |||| ||| |||||||||||||| Sbjct 133619 GACGAGTCCCGCTTCCAAGCCATGGAATAAGTAAAATAACGTTAAAGGTAGTGGTATTTC 133678 Query 221 ACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGA 280 || |||||||| |||||||||||||||||||| || ||||||||||||||||||||| Sbjct 133679 ACCGGCGCCGAA---GCTCCCACTTATTCTACACCCCTTAAGTCATTTCACAAAGTCGGA 133735 Query 281 CTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTG 340 ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct 133736 CTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGTTTCTTCCAAGCCCGTTCCCTTG 133795 Query 341 GCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 400 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 133796 GCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 133855 Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC 460 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 133856 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCC 133915 Query 461 GTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 133916 GTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 133975 Query 521 CATTGCGTCAACATCACTTT 540 ||||| |||| |||| |||| Sbjct 133976 CATTGTGTCAGCATC-CTTT 133994 >seq89 Length=1719426 Score = 706 bits (782), Expect = 0.0 Identities = 485/545 (89%), Gaps = 23/545 (4%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 1242655 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 1242714 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||| Sbjct 1242715 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCACCTGGATC 1242774 Query 127 GGC---CCGCGAAGGAC--CTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTC 181 ||| |||||| || | ||| |||||||| || ||| ||| ||||||| Sbjct 1242775 GGCGGCCCGCGAGGGGCGCCTTGGAGCCAGAAAGAGG--------GACGAGTCCCGCTTC 1242826 Query 182 ------ATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACG 235 || || ||||||||| |||| ||| |||||||||||||||| |||||||| Sbjct 1242827 CAAGCCATGGAATAAGTAAAATAACGTTAAAGGTAGTGGTATTTCACCGGCGCCGAA--- 1242883 Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 1242884 GCTCCCACTTATTCTACACCCCTTAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 1242943 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 1242944 ACAGGGTCTTCTTTCCCCGCTGTTTCTTCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 1243003 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1243004 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 1243063 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1243064 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 1243123 Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 1243124 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAGCATC 1243183 Query 536 ACTTT 540 |||| Sbjct 1243184 -CTTT 1243187 Score = 706 bits (782), Expect = 0.0 Identities = 485/545 (89%), Gaps = 23/545 (4%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 1296159 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 1296100 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||| Sbjct 1296099 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCACCTGGATC 1296040 Query 127 GGC---CCGCGAAGGAC--CTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTC 181 ||| |||||| || | ||| |||||||| || ||| ||| ||||||| Sbjct 1296039 GGCGGCCCGCGAGGGGCGCCTTGGAGCCAGAAAGAGG--------GACGAGTCCCGCTTC 1295988 Query 182 ------ATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACG 235 || || ||||||||| |||| ||| |||||||||||||||| |||||||| Sbjct 1295987 CAAGCCATGGAATAAGTAAAATAACGTTAAAGGTAGTGGTATTTCACCGGCGCCGAA--- 1295931 Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 1295930 GCTCCCACTTATTCTACACCCCTTAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 1295871 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 1295870 ACAGGGTCTTCTTTCCCCGCTGTTTCTTCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 1295811 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1295810 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 1295751 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1295750 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 1295691 Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 1295690 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAGCATC 1295631 Query 536 ACTTT 540 |||| Sbjct 1295630 -CTTT 1295627 >seq88 Length=702383 Score = 706 bits (782), Expect = 0.0 Identities = 485/545 (89%), Gaps = 23/545 (4%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 591084 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 591025 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||| Sbjct 591024 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCACCTGGATC 590965 Query 127 GGC---CCGCGAAGGAC--CTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTC 181 ||| |||||| || | ||| |||||||| || ||| ||| ||||||| Sbjct 590964 GGCGGCCCGCGAGGGGCGCCTTGGAGCCAGAAAGAGG--------GACGAGTCCCGCTTC 590913 Query 182 ------ATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACG 235 || || ||||||||| |||| ||| |||||||||||||||| |||||||| Sbjct 590912 CAAGCCATGGAATAAGTAAAATAACGTTAAAGGTAGTGGTATTTCACCGGCGCCGAA--- 590856 Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 590855 GCTCCCACTTATTCTACACCCCTTAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 590796 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| Sbjct 590795 ACAGGGTCTTCTTTCCCCGCTGTTTCTTCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 590736 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 590735 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 590676 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 590675 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 590616 Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 590615 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAGCATC 590556 Query 536 ACTTT 540 |||| Sbjct 590555 -CTTT 590552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635198266688