Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq18 257 6e-66 seq15 158 4e-36 >seq18 Length=145863 Score = 257 bits (284), Expect = 6e-66 Identities = 401/560 (72%), Gaps = 19/560 (3%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||||||| |||| |||||||||||||||| ||| |||||||| | |||||| || Sbjct 35196 TCGACTTGTAGGTCTTGCAGTCAAGCTCCCTTATGCCTTTACACTCTACGGCTGATTTCC 35255 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||| ||||||||||||||| | |||||||||| |||| ||||| | ||||||||| Sbjct 35256 GTCCAGCCTGAGGGAACCTTTGCACACCTCCGTTACCTTTTAGGAGGTGA-CCGCCCCAG 35314 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGAT-CATGGGCCAAGGTTAGATATCCA 179 | ||||| |||||| | ||||| || | | || || || ||||| || | Sbjct 35315 TCAAACTGCCCACCTGAAACTGTTAAGCGTCCTGTTTCAAGGAACACCGTTAGGATTCTA 35374 Query 180 CTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGC-GTGGCCGCATCATA 238 | ||||||||| | ||| | | ||||| | | | | || | | ||||| Sbjct 35375 GCCCCTCCAGAGTGGTCTCTCACTGATGGCTCCAGCCCTCCCGGAAGAGGACTC-TCATA 35433 Query 239 GTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTC 298 | |||||||||| || | |||| | || || ||||| |||||||| ||| ||| | Sbjct 35434 GCCTCCCACCTAGGCTGCGCAAAAGGGGCCCAAACCCAATTCCAAGCTACAGTAAAGCTT 35493 Query 299 CCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTAC-TG-CAATTTC 355 | |||||||| |||| | | ||| | ||||||| || | || || | ||||| Sbjct 35494 CATAGGGTCTTTCTGTCCAGGTGTAGGAAGCCCGCATCTTCAC--GGACATGTCTATTTC 35551 Query 356 ACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAACT 414 |||| | || | |||||||| | || |||||||||| ||||||| |||||||||| Sbjct 35552 ACCGAGTCTCTCTCTGAGACAGT-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACT 35610 Query 415 TACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGG 474 |||||||||||||||||||||||||||||| || |||||||| |||||||| || ||| Sbjct 35611 TACCCGACAAGGAATTTCGCTACCTTAGGACCGTCATAGTTACGGCCGCCGTTCACCGGG 35670 Query 475 GCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAG 534 ||||| | || || || | | | | | | || | ||| ||||||| | Sbjct 35671 GCTTCGGTCGCCAGCTTCTCCTA--AAG------GATAACCAACTTCCTTCACCTTCCGG 35722 Query 535 CACCGGGCAGGCGTCAGTCC 554 ||||||||||||||||| || Sbjct 35723 CACCGGGCAGGCGTCAGCCC 35742 >seq15 Length=69663 Score = 158 bits (174), Expect = 4e-36 Identities = 182/244 (75%), Gaps = 1/244 (0%) Strand=Plus/Minus Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCCC 300 ||||||||||| |||||||| | | | || | |||||| ||| ||||| | Sbjct 45784 CTCCCACCTATTCTACACAATCAGTCTCTCTCCTCAGCAGCAAGCTGCAGTAAAGGTGCA 45725 Query 301 G-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 ||||||| |||| | || | ||| |||||| || | | ||||||||| | Sbjct 45724 TAGGGTCTTACCGTCTTTCCCTGGGAACTCCGCATCTGCACGGAGATTTCAATTTCACTG 45665 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 | ||||| | |||||||| ||| |||||| ||||||||| ||| |||| ||||||||| Sbjct 45664 AGTCTGTGTTGGAGACAGCGGGGCAGTCGTGACGCCATTCATGCGGGTCAGAACTTACCT 45605 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||||||||||||||||| || | |||||| |||||||||||||| |||| Sbjct 45604 GACAAGGAATTTCGCTACCTTAGGACCGTCAGAGTTACGGCCGCCGTTTACTGGACCTTC 45545 Query 480 AATT 483 | || Sbjct 45544 AGTT 45541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702398195456