Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq18 161 2e-37 seq15 138 2e-30 >seq18 Length=145863 Score = 161 bits (178), Expect = 2e-37 Identities = 212/295 (72%), Gaps = 18/295 (6%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 ||||||||||||||||||||||||||||||||| | | ||| ||| Sbjct 28061 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCCTTGGATAC---------------CGT 28105 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || | || ||| | | ||||| ||||||||| || | || || |||| ||||| Sbjct 28106 C--AGTTATTCTTCTCCAAGAAAAGGAGTTTACAACCCACGGG-CCGTCTTCCTCCACGC 28162 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || |||||||||||||||||||||||| Sbjct 28163 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCTCACTGCTGCCTCCCGTAG 28222 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || |||||||||| | ||| || Sbjct 28223 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATTGTCCTCTCAGACCAGCTACTGAT 28282 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATC 295 | | | || ||| |||| ||||||| || |||| ||||| ||||| | |||| Sbjct 28283 CATTGCCTCGGTAGGCCATTACCCCACCAACTAGCTAATCAGACGCAAGCTCATC 28337 >seq15 Length=69663 Score = 138 bits (152), Expect = 2e-30 Identities = 137/176 (78%), Gaps = 1/176 (1%) Strand=Plus/Minus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| ||| ||||| | ||||||| |||| || ||| |||||| |||| |||||||| Sbjct 48973 CCTTCTTCCCCCACGCGGCATGGCTGGATCAGGCTTTCGCCCATTGTCCAAGATTCCTCA 48914 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| |||| ||| || ||| |||||||||||| ||| ||||| | || |||||| Sbjct 48913 CTGCTGCCGCCCGAAGGCGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGGCCATCCTCT 48854 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTG-GGCCGTTACCCCGCCTACTACCTAAT 279 ||| | ||| ||| | |||| |||| ||| ||||| | || |||||||||| Sbjct 48853 AAGACCGGCTAAGGATCTTTGGCTTGGTGTAGCCTTTACCTCACCAACTACCTAAT 48798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068798867072