Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq92 77.0 5e-12 seq89 77.0 5e-12 seq88 77.0 5e-12 >seq92 Length=1443051 Score = 77.0 bits (84), Expect = 5e-12 Identities = 101/135 (75%), Gaps = 4/135 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | ||| || |||||||| | ||| | |||| |||| | Sbjct 131742 GTACGAGAGGAACCGCCGG-TTCGGA-TAATTGGTAAT-GCGCTCGCCTGAAAAGGCGAT 131686 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||| ||||||||||| | || | | ||||||||||||||| ||| |||||| | Sbjct 131685 GGCGCAAAGCTACCATCCGTCGGCTAACACCTGAACGCCTCTAAGGTGGAAGCCATGCTA 131626 Query 121 -GAACGGGGTGATTC 134 || |||||| |||| Sbjct 131625 GGAGCGGGGTCATTC 131611 >seq89 Length=1719426 Score = 77.0 bits (84), Expect = 5e-12 Identities = 101/135 (75%), Gaps = 4/135 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | ||| || |||||||| | ||| | |||| |||| | Sbjct 1242330 GTACGAGAGGAACCGCCGG-TTCGGA-TAATTGGTAAT-GCGCTCGCCTGAAAAGGCGAT 1242274 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||| ||||||||||| | || | | ||||||||||||||| ||| |||||| | Sbjct 1242273 GGCGCAAAGCTACCATCCGTCGGCTAACACCTGAACGCCTCTAAGGTGGAAGCCATGCTA 1242214 Query 121 -GAACGGGGTGATTC 134 || |||||| |||| Sbjct 1242213 GGAGCGGGGTCATTC 1242199 Score = 77.0 bits (84), Expect = 5e-12 Identities = 101/135 (75%), Gaps = 4/135 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | ||| || |||||||| | ||| | |||| |||| | Sbjct 1296484 GTACGAGAGGAACCGCCGG-TTCGGA-TAATTGGTAAT-GCGCTCGCCTGAAAAGGCGAT 1296540 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||| ||||||||||| | || | | ||||||||||||||| ||| |||||| | Sbjct 1296541 GGCGCAAAGCTACCATCCGTCGGCTAACACCTGAACGCCTCTAAGGTGGAAGCCATGCTA 1296600 Query 121 -GAACGGGGTGATTC 134 || |||||| |||| Sbjct 1296601 GGAGCGGGGTCATTC 1296615 >seq88 Length=702383 Score = 77.0 bits (84), Expect = 5e-12 Identities = 101/135 (75%), Gaps = 4/135 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | ||| || |||||||| | ||| | |||| |||| | Sbjct 591409 GTACGAGAGGAACCGCCGG-TTCGGA-TAATTGGTAAT-GCGCTCGCCTGAAAAGGCGAT 591465 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | ||| ||||||||||| | || | | ||||||||||||||| ||| |||||| | Sbjct 591466 GGCGCAAAGCTACCATCCGTCGGCTAACACCTGAACGCCTCTAAGGTGGAAGCCATGCTA 591525 Query 121 -GAACGGGGTGATTC 134 || |||||| |||| Sbjct 591526 GGAGCGGGGTCATTC 591540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819199158784