Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq92 580 3e-163 seq89 580 3e-163 seq88 580 3e-163 seq93 87.8 5e-15 >seq92 Length=1443051 Score = 580 bits (642), Expect = 3e-163 Identities = 437/508 (86%), Gaps = 6/508 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| ||| ||| | ||| |||| |||||||||||||||||| Sbjct 143802 GTACTCATTCCAATTACCAGAGTTGAAAAACCCCGGTATTGTTATTTATTGTCACTACCT 143861 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 143862 CCTTGTGTCAAGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 143921 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||| | |||| ||||||| |||| |||| Sbjct 143922 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATCCTCCGTCACCCGTTACCACCACGGTA 143981 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| || | |||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 143982 AGCCAATACCTTACCGTCGAAAGTTGATAGGGCAGAAATTTGAATGAAACATCGCCGGCG 144041 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCC--CCGAAGGGCGTTG 298 | ||||||||||||||| |||||| |||| ||||| ||| | ||| || | Sbjct 144042 CTGGGCCATGCGATTCGTGGAGTTATCATGATTCACC-GCGAGTCGGACGAGTCCGGTCG 144100 Query 299 GTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTC 357 | ||||||||||||||||| ||||||| | |||| ||| ||| ||| |||||||||| Sbjct 144101 GCCTTTTATCTAATAAATACGTCCCTTCCAGGAGTC-GGGATTTCCGCACGTATTAGCTC 144159 Query 358 TAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAA 417 ||||||||| |||||||||| |||| ||||||| ||||||||||| ||||||||||||| Sbjct 144160 TAGAATTACTACGGTTATCCGAGTAGCAAGGTACCATCAAATAAACTATAACTGATTTAA 144219 Query 418 TGAGCCATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGCATGGCTTAATC 476 |||||||||||||||||||| ||||| | | ||||||||||||||||||||||||||| Sbjct 144220 TGAGCCATTCGCAGTTTCACAGTATAAAGCAGTTTATACTTAGACATGCATGGCTTAATC 144279 Query 477 TTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||| Sbjct 144280 TTTGAGACAAGCATATGACTACTGGCAG 144307 >seq89 Length=1719426 Score = 580 bits (642), Expect = 3e-163 Identities = 437/508 (86%), Gaps = 6/508 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| ||| ||| | ||| |||| |||||||||||||||||| Sbjct 1247351 GTACTCATTCCAATTACCAGAGTTGAAAAACCCCGGTATTGTTATTTATTGTCACTACCT 1247410 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1247411 CCTTGTGTCAAGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 1247470 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||| | |||| ||||||| |||| |||| Sbjct 1247471 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATCCTCCGTCACCCGTTACCACCACGGTA 1247530 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| || | |||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 1247531 AGCCAATACCTTACCGTCGAAAGTTGATAGGGCAGAAATTTGAATGAAACATCGCCGGCG 1247590 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCC--CCGAAGGGCGTTG 298 | ||||||||||||||| |||||| |||| ||||| ||| | ||| || | Sbjct 1247591 CTGGGCCATGCGATTCGTGGAGTTATCATGATTCACC-GCGAGTCGGACGAGTCCGGTCG 1247649 Query 299 GTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTC 357 | ||||||||||||||||| ||||||| | |||| ||| ||| ||| |||||||||| Sbjct 1247650 GCCTTTTATCTAATAAATACGTCCCTTCCAGGAGTC-GGGATTTCCGCACGTATTAGCTC 1247708 Query 358 TAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAA 417 ||||||||| |||||||||| |||| ||||||| ||||||||||| ||||||||||||| Sbjct 1247709 TAGAATTACTACGGTTATCCGAGTAGCAAGGTACCATCAAATAAACTATAACTGATTTAA 1247768 Query 418 TGAGCCATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGCATGGCTTAATC 476 |||||||||||||||||||| ||||| | | ||||||||||||||||||||||||||| Sbjct 1247769 TGAGCCATTCGCAGTTTCACAGTATAAAGCAGTTTATACTTAGACATGCATGGCTTAATC 1247828 Query 477 TTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||| Sbjct 1247829 TTTGAGACAAGCATATGACTACTGGCAG 1247856 Score = 580 bits (642), Expect = 3e-163 Identities = 437/508 (86%), Gaps = 6/508 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| ||| ||| | ||| |||| |||||||||||||||||| Sbjct 1291463 GTACTCATTCCAATTACCAGAGTTGAAAAACCCCGGTATTGTTATTTATTGTCACTACCT 1291404 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1291403 CCTTGTGTCAAGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 1291344 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||| | |||| ||||||| |||| |||| Sbjct 1291343 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATCCTCCGTCACCCGTTACCACCACGGTA 1291284 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| || | |||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 1291283 AGCCAATACCTTACCGTCGAAAGTTGATAGGGCAGAAATTTGAATGAAACATCGCCGGCG 1291224 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCC--CCGAAGGGCGTTG 298 | ||||||||||||||| |||||| |||| ||||| ||| | ||| || | Sbjct 1291223 CTGGGCCATGCGATTCGTGGAGTTATCATGATTCACC-GCGAGTCGGACGAGTCCGGTCG 1291165 Query 299 GTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTC 357 | ||||||||||||||||| ||||||| | |||| ||| ||| ||| |||||||||| Sbjct 1291164 GCCTTTTATCTAATAAATACGTCCCTTCCAGGAGTC-GGGATTTCCGCACGTATTAGCTC 1291106 Query 358 TAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAA 417 ||||||||| |||||||||| |||| ||||||| ||||||||||| ||||||||||||| Sbjct 1291105 TAGAATTACTACGGTTATCCGAGTAGCAAGGTACCATCAAATAAACTATAACTGATTTAA 1291046 Query 418 TGAGCCATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGCATGGCTTAATC 476 |||||||||||||||||||| ||||| | | ||||||||||||||||||||||||||| Sbjct 1291045 TGAGCCATTCGCAGTTTCACAGTATAAAGCAGTTTATACTTAGACATGCATGGCTTAATC 1290986 Query 477 TTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||| Sbjct 1290985 TTTGAGACAAGCATATGACTACTGGCAG 1290958 >seq88 Length=702383 Score = 580 bits (642), Expect = 3e-163 Identities = 437/508 (86%), Gaps = 6/508 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| ||| ||| | ||| |||| |||||||||||||||||| Sbjct 586388 GTACTCATTCCAATTACCAGAGTTGAAAAACCCCGGTATTGTTATTTATTGTCACTACCT 586329 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 586328 CCTTGTGTCAAGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 586269 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||| | |||| ||||||| |||| |||| Sbjct 586268 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATCCTCCGTCACCCGTTACCACCACGGTA 586209 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| || | |||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 586208 AGCCAATACCTTACCGTCGAAAGTTGATAGGGCAGAAATTTGAATGAAACATCGCCGGCG 586149 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCC--CCGAAGGGCGTTG 298 | ||||||||||||||| |||||| |||| ||||| ||| | ||| || | Sbjct 586148 CTGGGCCATGCGATTCGTGGAGTTATCATGATTCACC-GCGAGTCGGACGAGTCCGGTCG 586090 Query 299 GTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTC 357 | ||||||||||||||||| ||||||| | |||| ||| ||| ||| |||||||||| Sbjct 586089 GCCTTTTATCTAATAAATACGTCCCTTCCAGGAGTC-GGGATTTCCGCACGTATTAGCTC 586031 Query 358 TAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAA 417 ||||||||| |||||||||| |||| ||||||| ||||||||||| ||||||||||||| Sbjct 586030 TAGAATTACTACGGTTATCCGAGTAGCAAGGTACCATCAAATAAACTATAACTGATTTAA 585971 Query 418 TGAGCCATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGCATGGCTTAATC 476 |||||||||||||||||||| ||||| | | ||||||||||||||||||||||||||| Sbjct 585970 TGAGCCATTCGCAGTTTCACAGTATAAAGCAGTTTATACTTAGACATGCATGGCTTAATC 585911 Query 477 TTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||| Sbjct 585910 TTTGAGACAAGCATATGACTACTGGCAG 585883 >seq93 Length=1853137 Score = 87.8 bits (96), Expect = 5e-15 Identities = 82/102 (80%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 302 TTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||||||| || |||||| ||||||| | ||||||| || ||| |||||| ||||| Sbjct 582136 TTTTATCAAAGAAATACGTCCCTTCCAGGAGTCGGGAGTTCC-GCACGTATTATATCTAG 582194 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAA 402 |||||| |||||||||| |||| ||||||| ||||| |||| Sbjct 582195 AATTACTACGGTTATCCGAGTAGCAAGGTACCATCAAGTAAA 582236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510398398976