Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq57 118 8e-22 >seq57 Length=1368 Score = 118 bits (130), Expect = 8e-22 Identities = 305/455 (67%), Gaps = 10/455 (2%) Strand=Plus/Plus Query 66019 GAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATT 66078 ||||||||| || || |||| | || | |||| | ||| || |||||||||| Sbjct 877 GAGGTTGCACACCGCCGTCTCTGCGGGGCTCGAGTACTGCAGAATCTCACTGCACAGATT 936 Query 66079 ACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTA 66138 || ||| ||||| ||||| || || || ||| || ||||| ||||||||| | Sbjct 937 GGAGCTGCGGATGGTCCCCAAGTTGCTCTGGTTGGACTTCCGGTTGCAGGCATCCTTGAA 996 Query 66139 CATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCG 66198 | || |||||| || |||||||| | || || | | ||| |||| ||| || | || Sbjct 997 GAGCAGGTACGGTGTCCCGGTCTCGATCTGCGAGACCAGGATCGCGTTCCACAGCGTCCG 1056 Query 66199 TGCCTTCACCGTACGTACCGCCCTACCTTTGCGT-TCGTAATGTTCGTAGAGGTGTTCGA 66257 ||| | ||| || ||| ||||| | || |||||| ||||| || | | || Sbjct 1057 TGCGTCGACCTGGCGAACCCACCTAC-TCGACGCCTCGTAACCCTCGTACAGCAGCTTGA 1115 Query 66258 AGGATTCACCCCATACTTCGGACAGACATGGACACTTG-TGTGGACACATCAGCGACCAA 66316 || | ||| | || | || | |||||| | || || | |||||| ||| Sbjct 1116 AGTCCTGCCCCACCGCGTCAGGGAGCCCGGGACACGCGCTGGGGTC-CATCAGGCTCCAT 1174 Query 66317 TCACCATCCTGTTCTACACGACGC---ATAAATAGATCAGGTATCCAGAGGGCGTAGAAG 66373 | | |||| || |||| ||| || || || || |||| ||| | |||||||||| Sbjct 1175 TGAGTC-CCTGA-CTGCACG-CGCTCCATGAAGAGGTCCGGTACCCACATGGCGTAGAAG 1231 Query 66374 AGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAG 66433 |||||||| || || |||||| |||||||| || | ||| ||||| || ||| Sbjct 1232 AGATCGCGCGCCCGCCTCTCCTCGTCACCGTGATTCTTCTTGAGGTCCAGGAAGTCGAAG 1291 Query 66434 ATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAA 66468 | ||| || |||||||| || | |||||| ||||| Sbjct 1292 ACGTCTGCGTGCCATGGCTCGATGTAGATTGCGAA 1326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567486391840