Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq106 93.3 2e-13 seq4 89.7 2e-12 seq89 86.0 3e-11 >seq106 Length=3132237 Score = 93.3 bits (102), Expect = 2e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 349082 ATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGG 349141 ||||| |||| | |||| |||||| || ||||||||||| | || || ||||||||| Sbjct 1090475 ATCTCGGTGAGGCGCGGCACGCCCAGCGTGACGTTCTTGGCGGACACTCCCGCAAAGTGG 1090416 Query 349142 AAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCT 349201 ||||| | || |||| |||||| ||||| |||||| |||| |||| | |||| Sbjct 1090415 AAGGTGTTCAGCGTCATCTGCGTTGTCGGCTCCCCGATGGACTGCGCCGCCACTGTGCCG 1090356 Query 349202 ACCATCTCGCCGGG 349215 | |||||| ||||| Sbjct 1090355 ATCATCTCTCCGGG 1090342 Score = 84.2 bits (92), Expect = 9e-11 Identities = 132/186 (71%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 626267 CAGGTCGGGGCCTGCATCGTCAACGAGGACAAGCGCGTCGTGTCTATGGGCTACAACGGC 626326 ||||||||||| ||||| || | | |||||||| | || || ||| |||||||||||| Sbjct 900859 CAGGTCGGGGCATGCATAGTGAGCCAGGACAAGATCATCTTGGGTATTGGCTACAACGGC 900800 Query 626327 TTCCCGCGTGGCTGCAATGACGACGTCTTTCCTTGG---AAGCGCGATAGCGCATGTGAG 626383 ||||| | |||||| ||| || | || ||| |||| || |||| | | | Sbjct 900799 TTCCCAAGGGGCTGCCCAGACAGCGAGCTGCCCTGGGCAAAGCTCG--CACGCA-GCGGG 900743 Query 626384 GACATTCTCGACAGCAAGAGCCTCTATGTGGTTCACGCCGAACTCAACGCCATCCTCAAC 626443 || ||| |||| |||| | || ||| || || || ||||| |||||||||||| Sbjct 900742 GATCCTCTTGACACCAAGTATCCGTACGTGTGCCATGCAGAGCTCAATGCCATCCTCAAC 900683 Query 626444 AAGAAC 626449 |||||| Sbjct 900682 AAGAAC 900677 >seq4 Length=1187754 Score = 89.7 bits (98), Expect = 2e-12 Identities = 119/163 (73%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 448981 GAGGGCCTCGAGCAACATGGCGTA-GGTCATGCGCGACGGGTAGGCATGCGGGTTCATGA 449039 ||||||||| | ||| ||| | | ||||||||| || ||| |||||||||||| |||| Sbjct 986607 GAGGGCCTCTA-CAAGATGCCCGATGGTCATGCGGGAGGGGATGGCATGCGGGTTGATGA 986665 Query 449040 TGATGTCGGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGC 449099 ||| ||||||| ||| | || | |||||||||| || || || || || Sbjct 986666 TGAGGTCGGGCACAATGCCCTCTGCTGTCCAGGGCATGTCTTCCTGGGTGTATGTCATGC 986725 Query 449100 CGTTGACGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCC 449142 || || ||||||||| || || |||||| ||||||||||| Sbjct 986726 CGATGGTGCCCTTCTGCCCATGCCGGCTGGCAAACTTGTCCCC 986768 >seq89 Length=1719426 Score = 86.0 bits (94), Expect = 3e-11 Identities = 91/119 (76%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 349072 GGCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCC 349131 ||||| || |||||||||| | ||||| ||| | || | |||| || || || || Sbjct 311687 GGCGTTGATGATCTCCTTGATGCGGGGCACCCCCTGCGTGATGTTCATGCTGGCCACCCC 311746 Query 349132 GGCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTG-GCCC 349189 |||||||||||| |||| || |||| |||||| |||||||||||||| ||| |||| Sbjct 311747 GGCAAAGTGGAACGTCTTCAGCGTCATCTGCGTCCCGGGCTCGCCGATGCTCTGCGCCC 311805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084736299606588