Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq18 827 0.0 seq17 565 3e-156 seq93 87.8 2e-12 >seq18 Length=145863 Score = 827 bits (916), Expect = 0.0 Identities = 776/985 (79%), Gaps = 2/985 (0%) Strand=Plus/Minus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 ||||| || ||||| ||| || | |||||||| || | |||||||| || || || Sbjct 120631 TTCTGTGAATGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTA 120572 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 159921 |||||||| ||||| || | |||||| |||| ||||| |||| || | ||||| || Sbjct 120571 ATGATCCCTACTCTTTTAACTGCAACT-TCTGTGTTCATTATCGCATTTGTTGCTGCACC 120513 Query 159922 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAA 159981 ||||| ||||||||||| |||||||| || || | ||||| || | ||||||||||| Sbjct 120512 TCCTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACAA 120453 Query 159982 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 160041 |||||| |||||||| |||||||| | || |||||||||||||| |||||||| || || Sbjct 120452 CATCATTTCTGGTGCTGTTGTTCCTACATCAAACGCAATTGGTCTGCACTTCTACCCAAT 120393 Query 160042 TTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGT 160101 ||||||||| || || || ||||| ||||| || ||||||||||||| |||||| | || Sbjct 120392 TTGGGAAGCTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCGT 120333 Query 160102 CTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCG 160161 | |||||| | | ||||| | ||| |||||||||||||||||||| |||| ||| Sbjct 120332 ATGTCACTTCTTCCTAGGCATTTGCTGCTACATGGGTCGTGAGTGGGAACTTTCTTTCCG 120273 Query 160162 TCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGC 160221 | | || |||||||| |||||| ||| || |||||||| ||||| || |||||| |||| Sbjct 120272 TTTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGC 120213 Query 160222 TGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 160281 ||||||| || ||||||| ||||||| ||||| ||||| |||| ||||||| | ||||| Sbjct 120212 TGTATTCATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGTAT 120153 Query 160282 CTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCC 160341 || || ||||| |||| ||| |||| |||||||| || ||||| ||||||||||| || Sbjct 120152 TTCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCC 120093 Query 160342 GTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCATGG 160401 ||||||||||| ||||||||||| || |||||||| || || ||||| |||||||| || Sbjct 120092 ATTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGCTATGCACGG 120033 Query 160402 ATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTATGG 160461 ||||| || |||||| || || | || || || || | || || ||| ||| Sbjct 120032 TTCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAATCAGCAAACGCTGG 119973 Query 160462 TTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTCGG 160521 |||||| ||||||||||| ||||| ||||||||||| || || ||||| || ||||| || Sbjct 119972 TTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGGTTACTTTGG 119913 Query 160522 TCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTCGC 160581 |||| | ||||||||||| || || || |||||||| || || || ||||||||||| || Sbjct 119912 TCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCTTGC 119853 Query 160582 TGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTCAA 160641 |||||||||||| ||||| |||||||| ||||| |||||| | ||||| ||||||||||| Sbjct 119852 TGCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATTCAA 119793 Query 160642 TCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAACAC 160701 || || || ||||||||||||||||| | | ||| ||||| | ||| | ||||| Sbjct 119792 CCTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGCGTTATCAACAC 119733 Query 160702 TTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAACGC 160761 ||||| ||| | | ||||| || || || |||||||| |||||||| | ||||| Sbjct 119732 TTGGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAAACGC 119673 Query 160762 TCACAACTTCCCTCTCGACCTTGCT 160786 ||||||||||| || ||||||||| Sbjct 119672 ACACAACTTCCCACTAGACCTTGCT 119648 >seq17 Length=88650 Score = 565 bits (626), Expect = 3e-156 Identities = 750/1031 (73%), Gaps = 15/1031 (1%) Strand=Plus/Minus Query 161512 TGGTTCGATGTCCTTGACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGCTGGTCT 161571 ||||| |||| | || |||||| | || || || || || || |||||||||||| Sbjct 87630 TGGTTTGATGAAGTAGATGACTGGTTGCGCCGTGAACGATTTGTGTTCGTTGGCTGGTCT 87571 Query 161572 GGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACT 161631 || || | || || || || ||||| ||||| | || || ||| | || || || || Sbjct 87570 GGTCTGTTACTCTTCCCTACAGCTTACCTTGCATTAGGTGGCTGGTTGACAGGAACCACA 87511 Query 161632 TTCGCTACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGG-TGCAAATTT 161690 |||| ||| ||||| || |||||||| || ||||| || | || || ||||| || Sbjct 87510 TTCGTTACATCTTGGTACACACATGGACTTGCAAGTTCTTACTTAGAAGGATGCAACTTC 87451 Query 161691 TCTTACAGCGGCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTC-TCT 161749 | | ||||| || ||| |||||||| || |||||||| || || || ||| | | Sbjct 87450 T-TAACAGCAGCCGTTTCAACTCCAGCAAACAGCATGGGTCACTCA-TTGTTGTTCCTAT 87393 Query 161750 GGGGTCCTGAGGCTCAAGGGGA-TTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAAT 161808 |||| |||||||| ||||| || ||| || | ||| || | || || || ||| | Sbjct 87392 GGGGGCCTGAGGCACAAGGTGACTTTACTC-GCTGGTGTCAGTTGGGTGGTCTGTGGGCT 87334 Query 161809 TTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTT 161868 || || || | || || || || || || ||||| || ||||| || |||||||||||| Sbjct 87333 TTCGTAGCTTTACATGGTGCCTTTGCGCTTATTGGGTTTATGCTACGACAGTTTGAACTT 87274 Query 161869 GCTCGTCTTATCGGTA----TCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGC 161924 || | ||||||| | ||||||||||| |||||||| ||||| | |||||||| Sbjct 87273 GCAAG----ATCGGTAAAGCTTCGTCCTTACAACGCTATTGCCTTCTCAGCACCTATTGC 87218 Query 161925 TGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGGACAGTCGTCCTGGTTCTTCGCGCC 161984 ||| || || ||||| || || |||||| ||||||| || ||||||||| ||||| Sbjct 87217 TGTCTTCGTATCAGTCTTCCTTATCTATCCTTTGGGACAATCAGGCTGGTTCTTTGCGCC 87158 Query 161985 ATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTACTTTTCCTACAAGGTTTCCACAATTG 162044 ||||| || || || || ||| | || | |||||| | |||||||||||||| || Sbjct 87157 TAGCTTTGGTGTAGCGGCAATCTTCCGATTTATTCTTTTCTTCCAAGGTTTCCACAACTG 87098 Query 162045 GACGCTTAATCCGTTCCACATGATGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGCTCTC 162104 ||||||||| || ||||||||||||||||| |||||| | | |||| ||| | || | Sbjct 87097 GACGCTTAACCCTTTCCACATGATGGGTGTGGCAGGTGTTCTAGGTGCTGCACTTCTATG 87038 Query 162105 TGCTATTCACGGTGTGACTGTTGAAAACACGCTCTACCAAGATGGTGAACAAGCAAATAC 162164 ||| |||||||| | || || || ||||| || | |||||||||| || || || Sbjct 87037 TGCAATTCACGGAGCAACAGTAGAGAACACTCTTTTTGAAGATGGTGACGGTGCGAACAC 86978 Query 162165 TTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAACCG 162224 |||| || || || | ||||||| || ||||| ||||| ||||| || || ||||| Sbjct 86977 TTTCCGTGCATTCAACCCAACGCAAGCCGAAGAGACATACTCTATGGTAACAGCTAACCG 86918 Query 162225 TTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTTTAT 162284 ||| |||||||| ||||| ||| | ||||| || || |||||| | ||||||||||| Sbjct 86917 TTTTTGGTCACAAATCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTTCATTTCTTTAT 86858 Query 162285 GCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCT 162344 ||| || || || || | ||||| |||| ||| | || ||| |||| ||||| ||||| Sbjct 86857 GCTTTTTGTCCCTGTAACTGGTCTTTGGATGAGTGCAATTGGTGTTATCGGACTTGCTCT 86798 Query 162345 TAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATT 162404 ||| | || || || |||||||| || || ||||| |||||||| ||||| |||||||| Sbjct 86797 TAACTTACGAGCATATGACTTTGTTTCACAAGAGATCCGTGCAGCTGAGGACCCTGAATT 86738 Query 162405 TGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGCACC 162464 || || |||||||| || || || || | || |||||| || | |||||| |||| | Sbjct 86737 CGAGACTTTCTACACAAAAAACATTCTTCTAAACGAAGGTATTAGAGCATGGATGGCGGC 86678 Query 162465 AGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCTGCCTAGAGGTAACGC 162524 || || || ||||| || |||||||||| ||||| ||| | || | || ||||| Sbjct 86677 TCAGGACCAGCCACATGAAAAACTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGC 86618 Query 162525 ACTGTGAATGG 162535 || | ||||| Sbjct 86617 TCT-TTAATGG 86608 >seq93 Length=1853137 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/182 (71%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 160973 TCCTTGACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGTGCTT 161032 |||| || || || || || || || ||||| || ||||| || || |||||||||| Sbjct 202339 TCCTCGATGCCGCAGAAGAGGCTGGACTTGACCTCCCATACTCATGCCGCGCTGGTGCTT 202280 Query 161033 GCTCTACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCTTTCC 161092 |||| | || || || ||| | | ||| || ||| || || || || || |||||| Sbjct 202279 GCTCATCATGCGCCGGCAAGCTCGTGAGCGGCGATGTGGACCAGTCAGACCAGTCTTTCT 202220 Query 161093 TGGATGATGATCAACTTGAATCA-GGATTTGTCCTGACCTGCGTTGCTTATCCCACTTCT 161151 ||||||| || || | ||| | || || ||||| |||||||| || || ||||| || Sbjct 202219 TGGATGAGGACCAGC-AGAAGAACGGTTTCGTCCTTACCTGCGTCGCATACCCCACCTCC 202161 Query 161152 GA 161153 || Sbjct 202160 GA 202159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551375269426800