Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20LA000219_20[genbank_20GCA_5F000812005.1_202015-01- 02] 106 sequences; 48,546,496 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq18 859 0.0 seq17 585 3e-162 >seq18 Length=145863 Score = 859 bits (952), Expect = 0.0 Identities = 788/993 (79%), Gaps = 2/993 (0%) Strand=Plus/Minus Query 188851 TTCTGCGAATGGGTCACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 188910 ||||| |||||||| || ||| | ||||| || || | |||||||| ||||| || Sbjct 120631 TTCTGTGAATGGGTTACTAGCACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTCTA 120572 Query 188911 ATGATCCCTACGCTTCTCGCTGCAACCATCTGC-TTCATCGTCGCCTTTGTCGCTGCACC 188969 ||||||||||| ||| | ||||||| |||| ||||| |||| ||||| |||||||| Sbjct 120571 ATGATCCCTACTCTTTTAACTGCAACT-TCTGTGTTCATTATCGCATTTGTTGCTGCACC 120513 Query 188970 CCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 189029 ||||||||||| ||||| ||||| || || || | ||||| || | || || ||||| Sbjct 120512 TCCTGTAGACATCGATGGTATCCGTGAGCCTGTATCAGGTTCTCTACTTTACGGTAACAA 120453 Query 189030 CATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCAT 189089 |||||| |||||||||||||| ||| |||| |||||||||||||| ||||||||||| || Sbjct 120452 CATCATTTCTGGTGCTGTTGTTCCTACATCAAACGCAATTGGTCTGCACTTCTACCCAAT 120393 Query 189090 CTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGT 189149 |||||||| || ||||| || || ||||| |||||||||||||||| |||||| | || Sbjct 120392 TTGGGAAGCTGCTTCACTTGACGAATGGCTTTACAACGGTGGTCCTTACCAACTAATCGT 120333 Query 189150 CTTCCACTTCCTCATCGGCATCTACGCCTACATGGGTCGTGAGTGGGAACTCTCTTACCG 189209 | |||||| || | ||||| | | |||||||||||||||||||||||| |||| ||| Sbjct 120332 ATGTCACTTCTTCCTAGGCATTTGCTGCTACATGGGTCGTGAGTGGGAACTTTCTTTCCG 120273 Query 189210 TCTCGGTATGCGTCCTTGGATCTGCATTGCTTACTCTGCACCTGTTGCAGCAGCATCCGC 189269 | | || |||||||| |||||| | |||||||||||||| |||||||| || | || Sbjct 120272 TTTAGGAATGCGTCCATGGATCGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGC 120213 Query 189270 AGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTAT 189329 || || | |||| ||| | ||||||||||| ||||| || | ||||| |||||||| Sbjct 120212 TGTATTCATCATCTACCCTATCGGTCAAGGTTCATTCTCAGATGGTATGCCTTTGGGTAT 120153 Query 189330 CAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 189389 ||||| ||||||| |||| |||| |||||||| |||||||||||||| |||||||| Sbjct 120152 TTCAGGAACTTTCAACTTCATGATTGTTTTCCAAGCTGAGCACAACATCCTTATGCACCC 120093 Query 189390 CTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATGG 189449 ||||||||||| || || || ||||| |||||||||||||| ||||| || ||||| || Sbjct 120092 ATTCCACATGCTTGGTGTTGCTGGTGTGTTCGGTGGTTCACTTTTCTCAGCTATGCACGG 120033 Query 189450 TTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAACTATGG 189509 ||| || || || |||||||| | |||||||| ||||| | ||| || ||| ||| Sbjct 120032 TTCTCTAGTAACTTCTTCACTTATCCGTGAAACTACTGAGAACGAATCAGCAAACGCTGG 119973 Query 189510 TTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATTTCGG 189569 |||||| || || |||||||||||||| |||||||| |||||||| || || || || || Sbjct 119972 TTACAAATTCGGTCAAGAAGAAGAAACTTACAACATTGTTGCTGCACACGGTTACTTTGG 119913 Query 189570 TCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCGC 189629 |||||| ||||||||||| || || ||||||||||| |||||||||||||||||||| || Sbjct 119912 TCGTCTAATCTTCCAATACGCTTCATTCAACAACTCTCGTTCACTTCACTTCTTCCTTGC 119853 Query 189630 TGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAA 189689 ||| ||||| || || |||||||||||||| || || || || || ||||||||||| Sbjct 119852 TGCTTGGCCTGTAGTTGGTATCTGGTTTACTGCTCTTGGTATCTCTACTATGGCATTCAA 119793 Query 189690 CCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACAC 189749 ||| || || ||||||||||| || || || | || ||||||||| ||| | ||||| Sbjct 119792 CCTTAACGGATTCAACTTCAACCAGTCAGTTGTAGACTCTCAAGGTCGCGTTATCAACAC 119733 Query 189750 ATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGC 189809 |||| ||| | |||||||||| |||||||||||||| ||||| || | ||||| Sbjct 119732 TTGGGGTGACATCATCAACCGTGCCAACCTTGGTATGGAAGTAATGCACGAAAGAAACGC 119673 Query 189810 TCACAACTTCCCTCTTGATCTGGCAGCAGCAGA 189842 ||||||||||| || || || || ||| ||| Sbjct 119672 ACACAACTTCCCACTAGACCTTGCTTCAGTAGA 119640 >seq17 Length=88650 Score = 585 bits (648), Expect = 3e-162 Identities = 740/1009 (73%), Gaps = 16/1009 (2%) Strand=Plus/Minus Query 189999 GATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTT 190058 ||||||||| | || || || ||||| || || || |||||||| | | || || Sbjct 87615 GATGACTGGTTGCGCCGTGAACGATTTGTGTTCGTTGGCTGGTCTGGTCTGTTACTCTTC 87556 Query 190059 CCCACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGACGTTTGCTACAAGCTGG 190118 || || ||||| || ||| | ||||||||| | || || || || || | |||| ||| Sbjct 87555 CCTACAGCTTACCTTGCATTAGGTGGCTGGTTGACAGGAACCACATTCGTTACATCTTGG 87496 Query 190119 TACACCCACGGACTCGCAAGTAGTTACCTTGAGGG-TGCTAATTTTCTTACAGCGGCTGT 190177 ||||| || ||||| |||||| |||| | || || ||| | || | | ||||| || || Sbjct 87495 TACACACATGGACTTGCAAGTTCTTACTTAGAAGGATGCAACTTCT-TAACAGCAGCCGT 87437 Query 190178 GTCAACGCCTGCTGATGCTATGGGTCATTC--TCTTCTTCTACTTTGGGGTCCTGAATCT 190235 ||||| || || | |||||||| || | || ||| || ||||| ||||| | Sbjct 87436 TTCAACTCCAGCAAACAGCATGGGTCACTCATTGTTGTTC--CTATGGGGGCCTGAGGCA 87379 Query 190236 CAAGGCGA-TTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCA 190294 ||||| || ||| || | ||| || | || || || |||||||| || || | || Sbjct 87378 CAAGGTGACTTTACTC-GCTGGTGTCAGTTGGGTGGTCTGTGGGCTTTCGTAGCTTTACA 87320 Query 190295 CGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACGTCTCATCGG 190354 || || || || || ||||| || ||||| || ||||||||||| ||| | ||||| Sbjct 87319 TGGTGCCTTTGCGCTTATTGGGTTTATGCTACGACAGTTTGAACTTGCAAG----ATCGG 87264 Query 190355 TA----TCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCG 190410 || | ||||||||||| |||||||| ||||| | ||||| ||||| || || | Sbjct 87263 TAAAGCTTCGTCCTTACAACGCTATTGCCTTCTCAGCACCTATTGCTGTCTTCGTATCAG 87204 Query 190411 TCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGGTGTGG 190470 |||| || ||||| ||| |||| ||||| | |||||||| ||||| ||| ||||| | Sbjct 87203 TCTTCCTTATCTATCCTTTGGGACAATCAGGCTGGTTCTTTGCGCCTAGCTTTGGTGTAG 87144 Query 190471 CAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAACCCCT 190530 | || |||||||| || | || ||||| || || ||||| ||||||||||| ||||| | Sbjct 87143 CGGCAATCTTCCGATTTATTCTTTTCTTCCAAGGTTTCCACAACTGGACGCTTAACCCTT 87084 Query 190531 TCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCATGGTG 190590 |||||||||||||||| |||||| | || || | ||||| || | ||||| || || | Sbjct 87083 TCCACATGATGGGTGTGGCAGGTGTTCTAGGTGCTGCACTTCTATGTGCAATTCACGGAG 87024 Query 190591 TGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAGCATTCG 190650 || |||||||| ||| | | |||||||||||| || ||||| || |||||| Sbjct 87023 CAACAGTAGAGAACACTCTTTTTGAAGATGGTGACGGTGCGAACACTTTCCGTGCATTCA 86964 Query 190651 ACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAA 190710 || | || |||| |||||||| || || ||||| || || |||||||| ||||| |||| Sbjct 86963 ACCCAACGCAAGCCGAAGAGACATACTCTATGGTAACAGCTAACCGTTTTTGGTCACAAA 86904 Query 190711 TCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTG 190770 |||||||||| || ||| || || | ||| | |||||||||||||| ||||| |||| Sbjct 86903 TCTTTGGTGTAGCTTTCTCAAACAAACGTTGGCTTCATTTCTTTATGCTTTTTGTCCCTG 86844 Query 190771 TTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTT 190830 | | ||||| |||| | | || ||| |||| || |||||||| ||| | || || | Sbjct 86843 TAACTGGTCTTTGGATGAGTGCAATTGGTGTTATCGGACTTGCTCTTAACTTACGAGCAT 86784 Query 190831 ATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTTTACA 190890 |||||||||| || ||||||||| | ||||| || || || || ||||||||||| |||| Sbjct 86783 ATGACTTTGTTTCACAAGAGATCCGTGCAGCTGAGGACCCTGAATTCGAGACTTTCTACA 86724 Query 190891 CAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGATCAACCCC 190950 ||||||| || ||| | || |||||| || | ||||| |||| || || || || | Sbjct 86723 CAAAAAACATTCTTCTAAACGAAGGTATTAGAGCATGGATGGCGGCTCAGGACCAGCCAC 86664 Query 190951 ATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999 |||| || ||||||| ||||| || || || ||| | || |||||||| Sbjct 86663 ATGAAAAACTTGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCTCT 86615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634079159844000