Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq501 98.7 2e-18 seq2899 96.9 7e-18 >seq501 Length=1514 Score = 98.7 bits (108), Expect = 2e-18 Identities = 226/331 (68%), Gaps = 16/331 (5%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| ||||||||| | |||| ||| | |||||| || |||| | || ||| | Sbjct 867 AGGGGAGTGAAATAGCGCATGAAACCGTAATCTGACAAGCAGTGGGAG--GGGT-ATTAG 923 Query 71 G--TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAA 128 |||| |||||||| | | | |||||||| ||| ||| | | || |||||| Sbjct 924 CCCTGACCGCGTGCCTGTGGAAGAATGAGCCGGCGACTTA-TAGGGGGTGGCAGGGTTAA 982 Query 129 GG-GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGG 187 || | ||| || |||| ||| |||||| || ||||||||||||| | | ||| Sbjct 983 GGAGTTTCTT---CGA-AGCCAAAGCGAAAGCAAGTCTTAACAGGGCGATAA-TAGGTCA 1037 Query 188 CGC----TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGC 243 | | | ||| |||| || |||||||| ||| | |||| ||||| |||||| | Sbjct 1038 CTCCTTATGGACCCGAACCCGGGTGATCTAACCATGGCCAGGATGAAGCTTGGGTAACAC 1097 Query 244 GTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGT 303 |||| | |||||| | | |||||||| | | |||||| | || ||||||| Sbjct 1098 CAAGTGGAAGTCCGAACTCATCGATGTTGAAAAATCGTGGGATGAGCTGTGGTTAGGGGT 1157 Query 304 GAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 |||| ||||||| |||| ||| ||||| || Sbjct 1158 GAAATGCCAATCGAACTCGGAGCTAGCTGGT 1188 >seq2899 Length=673 Score = 96.9 bits (106), Expect = 7e-18 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 194 ACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGG 253 || ||||||| |||||||| ||| |||||||||||| | |||||| | | |||||| Sbjct 570 ACCCGAAACCGGGTGATCTAGCCATGAGCAGGTTGAAAGGGGGGTAACACTTTCTGGAGG 511 Query 254 ACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAA 313 |||||||| || || | || |||||||| | || ||||||||||| ||||| Sbjct 510 ACCGAACCCGTGTCTGTGGCAATAGGCAGGGATGACTTGTGGCTAGGGGTGAAAAGCCAA 451 Query 314 TCAAACTGGGAAATAGCTCGT 334 || |||| ||| |||||| || Sbjct 450 TCGAACTCGGAGATAGCTGGT 430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972570506752