Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1188 320 7e-85 >seq1188 Length=2275 Score = 320 bits (354), Expect = 7e-85 Identities = 482/671 (72%), Gaps = 32/671 (5%) Strand=Plus/Minus Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85 || || | |||| |||||| |||||||||||||||||| | || || ||||| | | Sbjct 1428 GAGGCGCTTTCGCAGAGTCGGGTTGTTTGGGAATGCAGCCCAAAGCAGGTGGTAAGTCCC 1369 Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145 ||||| ||||||||||| | ||||||||||||| ||||||| | || ||||||||| Sbjct 1368 ATCTAAGGCTAAATATTGACGGGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGA 1309 Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCA 205 |||| |||||| |||||||||||||||| | ||||||||||| ||||||| | ||| | Sbjct 1308 AAAGAACTTTGAAAAGAGAGTTAAAAAGTGCTTGAAATTGTTGGGAGGGAAGGGATTGGA 1249 Query 206 ACCAGACT-TGCCCGCAGTTGCTCAA-CCGGCCCCTCGGCCGG-TGCACTCTTCTGCGGT 262 | ||| | ||| ||||| ||||||| ||||||| || | | | ||| | Sbjct 1248 GGTCGCGGGTGCGCCCAG--GCTCACGCCGGCCCTACGGCCGGCTGTA-TGTGCTGGGTG 1192 Query 263 CAGGCCAGCATCAGCT---CGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCG 319 | || ||||||| | | ||||||| | | |||| | | ||||| ||| Sbjct 1191 CTGGTCAGCATCGGTTAGTCGGGCGGGACAACAGCGGCCTTTGATCGGCCGCCCCTGTCG 1132 Query 320 GGGGG-TGTTATAGCCCGGGGTGGAATGCGGCCCGC-CTGGAC--TGAGGTCC-GCGCTC 374 || ||| ||| || |||| | ||| || | | | || || |||||| Sbjct 1131 CCCGGCTGT------CCGAGG---AATGAAGGGCGCTCTCGGCCTTCGGGACCTGCGCTC 1081 Query 375 CGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGT 434 |||||||||||| || | | || | |||||||||| ||||||||||||||||| Sbjct 1080 TC---AGGATGCTGGCGGAAGGCCTCCAATCTGCCCGTCTTGAAACACGGACCAAGGAGT 1024 Query 435 CTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGA-- 492 ||||| ||||||| |||| | |||||| || | | |||| | | || Sbjct 1023 ACAACATGCATGCGAGCTGGTGGGCGGAAAACCCA----CGAAGCGCAAGTAACCTGACT 968 Query 493 GGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGT 552 ||||||| | || | ||||||||| ||||| | |||| | | || | ||||||| Sbjct 967 GGTGGGATGGCCTGTGCCTGCACCATCAACCGACCATGATCTTCTGTGAAAGGTTTGAGT 908 Query 553 AAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAG 612 |||||| ||||| |||||||||||||||||||||||||||| |||| |||||||| Sbjct 907 GCGAGCATGTTTGTTGTGACCCGAAAGATGGTGAACTATGCCTGAGCAGGGCGAAGCCAG 848 Query 613 AGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGG 672 |||||||||||||||||||||| || || ||| ||||||||||| | || | ||||| Sbjct 847 AGGAAACTCTGGTGGAGGCTCGTAGATGTGCTGACGTGCAAATCGCTTTTCGGACTTGGG 788 Query 673 TATAGGGGCGA 683 ||||||||||| Sbjct 787 TATAGGGGCGA 777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079493973050