Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq1716 224 3e-56 seq2853 136 1e-29 >seq1716 Length=1290 Score = 224 bits (248), Expect = 3e-56 Identities = 237/311 (76%), Gaps = 1/311 (0%) Strand=Plus/Plus Query 26 AACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTGGG 85 |||| |||||||||||||||||||||||| ||| ||||||||||| |||||| | |||| Sbjct 1 AACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATGCAAGCGTTATCCGGAATCATTGGG 60 Query 86 CGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGGCTTAACCTGGG 145 ||||||| || | ||| |||| |||| | ||||||| | ||||| |||| | Sbjct 61 CGTAAAGGGTCCTGAGGTGGTTTGCTAAGTCTACTGTGAAAGATCAGGGCTCAACCCTGA 120 Query 146 AATTGCATTTGTGACTG-CACGACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTA 204 || ||| | | |||| || | |||| | | || || || |||||||| ||||| Sbjct 121 AAATGCGGTGGAAACTGGCAGGCTTAGAATACGGTAGGGGCAGGGGGAATTCCCGGTGTA 180 Query 205 GCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAA 264 || ||||||||| ||||||| ||| ||||||||| |||||||||| || ||||| | Sbjct 181 GCGGTGAAATGCATAGATATCGGGAAGAACACCAAAGGCGAAGGCACCCTGCTGGGCCGA 240 Query 265 CACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCA 324 | |||| || | |||||||| ||||||||||| ||||||||||||| |||||||| Sbjct 241 TATTGACACTGACAGACGAAAGCTAGGGGAGCAAACCGGATTAGATACCCGGGTAGTCCT 300 Query 325 CGCCCTAAACG 335 ||| |||||| Sbjct 301 AGCCGTAAACG 311 >seq2853 Length=425 Score = 136 bits (150), Expect = 1e-29 Identities = 132/170 (78%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 168 CTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTG 227 ||||||| | ||||||| |||||||||| | |||| ||||||| ||||||| | Sbjct 411 CTAGAGTAAGCTAGAGGGGAGTGGAATTCCTGGAGTAGGGGTGAAATCTGTAGATACCAG 352 Query 228 GAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGC 287 |||||| || | ||||||||| | ||||||| ||||||||| | | ||||||| Sbjct 351 GAGGAAGGCCGAATGCGAAGGCATCTCCCTGGGGCTTAACTGACGCTGAGGTGCGAAAGC 292 Query 288 GTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||| | |||| ||||||||| ||||| |||||||||||||| ||| || Sbjct 291 GTGGGTATCAAAGAGGATTAGAGACCCTTGTAGTCCACGCCCTCAACCAT 242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289295770464