Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Coccomyxa_20sp._20SUA001_20[genbank_20GCA_5F001244535.1_202015-08- 05] 23,591 sequences; 11,754,406 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq4446 109 8e-22 seq3689 98.7 1e-18 >seq4446 Length=441 Score = 109 bits (120), Expect = 8e-22 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 ||||||||||||||||||||||||||||||||||||||| ||||||| | |||| | Sbjct 439 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 380 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| |||||||||||| | |||||||||||||| |||| Sbjct 379 CGCGCCCCTAGGTATTCTCTACCCACCTACCTGTGTCGGTTTCGGGTA 332 >seq3689 Length=887 Score = 98.7 bits (108), Expect = 1e-18 Identities = 170/242 (70%), Gaps = 14/242 (6%) Strand=Plus/Plus Query 7 CTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCT 66 || ||| ||||||||||||||||| || |||| | || || | || || | ||| Sbjct 211 CTGCCAGCACCGGGCAGGCGTCAGACCCAATACTTGATGTTGCCATTTT-GCTGAGTCCT 269 Query 67 GTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGT 126 ||||||||| ||||||||||| ||| ||||||| ||| || | ||| | Sbjct 270 GTGTTTTTAATAAACAGTCGCCACCCCCTATTCTGTGCCGCCTTCTT--GCTT------T 321 Query 127 CGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTT 186 | || || || || | |||| |||||||||||||| | || |||||||| |||||| Sbjct 322 GGAGCA--AGAAG--GCCCTCCTTATCCCGAAGTTACGGAGTCAATTTGCCGAGTTCCTT 377 Query 187 AACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGG 246 | || ||| | | | |||||| || | || ||| | ||||||||| |||||| || Sbjct 378 CAACATGGTTTTCTCTATCGCCTTGGTTTACTAAACCAGTTCACCTGTGTTGGTTTA-GG 436 Query 247 TA 248 || Sbjct 437 TA 438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694241303343